Build compilation errors on macos #165
Description
G'day. This is very non-urgent. I've worked around this by using another machine, and I see this is all work in progress still, so I'd be happy with a 'your system is weird', and closing the issue. Just flagging in case it is remotely helpful.
I have been trying to install dust2 on my mac (2022, M2 chip, Ventura 13.1) following the installation instructions in the readme and it errors with a bunch of CPP compilation stuff. dust (v1) compiles fine with equivalent instructions.
Details
Here's the noise, session info down the bottom
install.packages(
"dust2",
type = "source",
repos = c("https://mrc-ide.r-universe.dev", "https://cloud.r-project.org"))trying URL 'https://mrc-ide.r-universe.dev/src/contrib/sha256-b1ef74f9db893653add87d187a2ef03f17695e1fa532c0f995fcd42a2f939730'
Content type 'application/gzip' length 1378259 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
* installing *source* package ‘dust2’ ...
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/monty/include' -I/opt/R/arm64/include -I../inst/include -DHAVE_INLINE -fPIC -falign-functions=64 -Wall -g -O2 -c cpp11.cpp -o cpp11.o
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/cpp11/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/monty/include' -I/opt/R/arm64/include -I../inst/include -DHAVE_INLINE -fPIC -falign-functions=64 -Wall -g -O2 -c logistic.cpp -o logistic.o
In file included from logistic.cpp:3:
In file included from ../inst/include/dust2/common.hpp:7:
../inst/include/dust2/array.hpp:16:16: error: constexpr variable cannot have non-literal type 'const dust2::array::(anonymous namespace)::(lambda at ../inst/include/dust2/array.hpp:16:23)'
constexpr auto min2 = [](auto a, auto b) { return a < b ? a : b; };
^
../inst/include/dust2/array.hpp:16:23: note: lambda closure types are non-literal types before C++17
constexpr auto min2 = [](auto a, auto b) { return a < b ? a : b; };
^
../inst/include/dust2/array.hpp:17:16: error: constexpr variable cannot have non-literal type 'const dust2::array::(anonymous namespace)::(lambda at ../inst/include/dust2/array.hpp:17:23)'
constexpr auto max2 = [](auto a, auto b) { return a > b ? a : b; };
^
../inst/include/dust2/array.hpp:17:23: note: lambda closure types are non-literal types before C++17
constexpr auto max2 = [](auto a, auto b) { return a > b ? a : b; };
^
../inst/include/dust2/array.hpp:177:63: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
static_assert("reduction over 5d arrays not yet implemented");
^
, ""
../inst/include/dust2/array.hpp:183:63: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
static_assert("reduction over 6d arrays not yet implemented");
^
, ""
../inst/include/dust2/array.hpp:189:63: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
static_assert("reduction over 7d arrays not yet implemented");
^
, ""
../inst/include/dust2/array.hpp:195:63: warning: 'static_assert' with no message is a C++17 extension [-Wc++17-extensions]
static_assert("reduction over 8d arrays not yet implemented");
^
, ""
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:16:40: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_build_internal<T, std::void_t<decltype(T::build_internal)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:21:42: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_packing_gradient<T, std::void_t<decltype(T::packing_gradient)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:26:36: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_zero_every<T, std::void_t<decltype(T::zero_every)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:31:32: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_update<T, std::void_t<decltype(T::update)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:36:29: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_rhs<T, std::void_t<decltype(T::rhs)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:42:32: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_output<T, std::void_t<decltype(T::output)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:47:33: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_special<T, std::void_t<decltype(T::size_special)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:52:32: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_delays<T, std::void_t<decltype(T::delays)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:57:32: error: no template named 'void_t' in namespace 'std'; did you mean '__void_t'?
struct test_has_events<T, std::void_t<decltype(T::events)>>: std::true_type {};
~~~~~^~~~~~
__void_t
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:525:8: note: '__void_t' declared here
struct __void_t { typedef void type; };
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:62:45: error: no template named 'is_invocable' in namespace 'std'; did you mean '__invokable'?
using test_rhs_signature_uses_delays = std::is_invocable<decltype(T::rhs), typename T::real_type, typename T::real_type*, typename T::shared_state&, typename T::internal_state&, typename dust2::ode::delay_result_type<typename T::real_type>&, typename T::real_type*>;
~~~~~^~~~~~~~~~~~
__invokable
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:3955:1: note: '__invokable' declared here
using __invokable = __invokable_r<void, _Fp, _Args...>;
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:65:48: error: no template named 'is_invocable' in namespace 'std'; did you mean '__invokable'?
using test_output_signature_uses_delays = std::is_invocable<decltype(T::output), typename T::real_type, typename T::real_type*, typename T::shared_state&, typename T::internal_state&, typename dust2::ode::delay_result_type<typename T::real_type>&>;
~~~~~^~~~~~~~~~~~
__invokable
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/c++/v1/type_traits:3955:1: note: '__invokable' declared here
using __invokable = __invokable_r<void, _Fp, _Args...>;
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:3:
In file included from ../inst/include/dust2/r/helpers.hpp:7:
../inst/include/dust2/properties.hpp:76:6: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (test_has_delays<T>::value && test_has_output<T>::value) {
^
../inst/include/dust2/properties.hpp:85:6: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (test_has_delays<T>::value) {
^
../inst/include/dust2/properties.hpp:133:6: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (properties<T>::has_special::value) {
^
../inst/include/dust2/properties.hpp:142:6: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (properties<T>::has_output::value) {
^
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:8:
In file included from ../inst/include/dust2/continuous/system.hpp:12:
../inst/include/dust2/continuous/solver.hpp:190:22: warning: decomposition declarations are a C++17 extension [-Wc++17-extensions]
const auto [had_event, t_next] = apply_events(t, h, y, events, internals);
^~~~~~~~~~~~~~~~~~~
In file included from logistic.cpp:85:
In file included from ../inst/include/dust2/r/continuous/system.hpp:8:
../inst/include/dust2/continuous/system.hpp:96:8: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (properties<T>::is_mixed_time::value) {
^
../inst/include/dust2/continuous/system.hpp:380:10: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (rhs_uses_delays_) {
^
../inst/include/dust2/continuous/system.hpp:399:10: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (output_uses_delays_) {
^
../inst/include/dust2/continuous/system.hpp:419:8: warning: constexpr if is a C++17 extension [-Wc++17-extensions]
if constexpr (has_delays_) {
^
13 warnings and 13 errors generated.
make: *** [logistic.o] Error 1
ERROR: compilation failed for package ‘dust2’
* removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/dust2’
Warning in install.packages :
installation of package ‘dust2’ had non-zero exit status
The downloaded source packages are in
‘/private/var/folders/pw/9ts48jn53r14c5dldx03_5mw0000gq/T/RtmpoD4sCx/downloaded_packages’
# dust2 installation
install.packages(
"dust2",
type = "source",
repos = c("https://mrc-ide.r-universe.dev", "https://cloud.r-project.org"))
#> Warning in install.packages("dust2", type = "source", repos =
#> c("https://mrc-ide.r-universe.dev", : installation of package 'dust2' had
#> non-zero exit status
devtools::session_info()
#> ─ Session info ───────────────────────────────────────────────────────────────
#> setting value
#> version R version 4.2.2 (2022-10-31)
#> os macOS Ventura 13.1
#> system aarch64, darwin20
#> ui X11
#> language (EN)
#> collate en_US.UTF-8
#> ctype en_US.UTF-8
#> tz Australia/Perth
#> date 2025-11-25
#> pandoc 3.1.1 @ /Applications/RStudio.app/Contents/Resources/app/quarto/bin/tools/ (via rmarkdown)
#>
#> ─ Packages ───────────────────────────────────────────────────────────────────
#> package * version date (UTC) lib source
#> cachem 1.0.7 2023-02-24 [1] CRAN (R 4.2.0)
#> callr 3.7.3 2022-11-02 [1] CRAN (R 4.2.0)
#> cli 3.6.5 2025-04-23 [1] CRAN (R 4.2.2)
#> crayon 1.5.2 2022-09-29 [1] CRAN (R 4.2.0)
#> devtools 2.4.5 2022-10-11 [1] CRAN (R 4.2.0)
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#> htmlwidgets 1.6.4 2023-12-06 [1] CRAN (R 4.2.3)
#> httpuv 1.6.9 2023-02-14 [1] CRAN (R 4.2.0)
#> knitr 1.42 2023-01-25 [1] CRAN (R 4.2.0)
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#> magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.2.0)
#> memoise 2.0.1 2021-11-26 [1] CRAN (R 4.2.0)
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#> rstudioapi 0.16.0 2024-03-24 [1] CRAN (R 4.2.3)
#> sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.2.0)
#> shiny 1.7.4 2022-12-15 [1] CRAN (R 4.2.0)
#> stringi 1.7.12 2023-01-11 [1] CRAN (R 4.2.0)
#> stringr 1.5.0 2022-12-02 [1] CRAN (R 4.2.0)
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#> xtable 1.8-4 2019-04-21 [1] CRAN (R 4.2.0)
#> yaml 2.3.7 2023-01-23 [1] CRAN (R 4.2.0)
#>
#> [1] /Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library
#>
#> ──────────────────────────────────────────────────────────────────────────────Created on 2025-11-25 with reprex v2.0.2