Skip to content

Commit 6398c13

Browse files
committed
Merge branch 'main' of https://github.com/mshamash/OnePetri
2 parents 25e1a42 + ddc3a8f commit 6398c13

File tree

1 file changed

+12
-4
lines changed

1 file changed

+12
-4
lines changed

README.md

Lines changed: 12 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -26,8 +26,10 @@ OnePetri v1.0.0-6 is the [latest public release](https://github.com/mshamash/One
2626
1. [Changelog](#changelog)
2727
2. [App Description](#about)
2828
3. [Using OnePetri](#use)
29-
4. [Contact](#contact)
30-
5. [Copyright](#copyright)
29+
4. [Benchmark Dataset & Results](#benchmark)
30+
5. [Trained Models](#models)
31+
6. [Contact](#contact)
32+
7. [Copyright](#copyright)
3133

3234

3335
---
@@ -69,12 +71,18 @@ Using the quick count feature, you can quickly get plaque counts for any image f
6971

7072
Choose the plaque assay option from the main menu. Using the stepper control, tap the + until reaching the number of plates/dilutions you would like to process. A maximum of 15 plates can be analyzed at any given moment. Select the plate you would like to analyze first and choose an image or take a photo for analysis. Once plaques are counted, the plate will be added to the plaque assay and PFU/mL calculated based on the value entered in the 'volume plated (uL)' field. The final averaged titre over all plates is shown at the bottom of the screen.
7173

72-
*Note*: plate 1 corresponds to tenfold dilution factor 10^-1, plate 2 corresponds to 10^-2, and so on...
74+
**Note**: plate 1 corresponds to tenfold dilution factor 10^-1, plate 2 corresponds to 10^-2, and so on...
7375

74-
*Note 2*: if you do not have all sequential plates in a dilution series, you may leave those plates blank and they will not be included in the final calculations.
76+
**Note 2**: if you do not have all sequential plates in a dilution series, you may leave those plates blank and they will not be included in the final calculations.
7577

7678
*More assays coming soon...*
7779

80+
## Benchmark Dataset & Results <a name="benchmark"></a>
81+
The benchmark dataset of 100 images and corresponding results can be found here https://github.com/mshamash/onepetri-benchmark.
82+
83+
## Trained Models <a name="models"></a>
84+
The trained YOLOv5s models used within OnePetri can be found here https://github.com/mshamash/onepetri-models. The repository contains the PyTorch weights file (.pt extension) as well as the converted Apple CoreML model file (.mlmodel extension) and will be updated regularly, as new versions of the models are released.
85+
7886
## Contact <a name="contact"></a>
7987
If you have any questions or comments on OnePetri, please contact Michael Shamash (michael@onepetri.ai) or [create a GitHub issue in this repository](https://github.com/mshamash/OnePetri/issues)!
8088

0 commit comments

Comments
 (0)