DESCRIPTION

Package: molBV
Type: Package
Title: The Immune Landscape of Molecular Bacterial Vaginosis and HPV Natural History
Version: 1.0
Author: Mykhaylo Usyk, Nicolas Schlecht, Sarah Pickering, LaShanda Williams, Christopher Sollecito, Ana Gradissimo, Mahboobeh Safian, Ligia A Pinto, Rolando Herrero, Carolina Porras, Mark Shiffman, Shankar Viswanathan, Anne Nucci-Sack, Angela Diaz, Robert Burk
Maintainer: Wodan Ling <wling@fredhutch.org>, Xing Hua <xhua2@fredhutch.org>
Description: We demonstrate that 16S rRNA amplicon sequencing and a novel pipeline can be used to generate a molecular Nugent BV score (molBV) corresponding to the Nugent score 0 - 10. This algorithm is independent of the region of 16S rRNA amplified, the sequencing platform and source population.
License: GPL (>=2)
Encoding: UTF-8
LazyData: true
NeedsCompilation: no
Imports: phyloseq, ggplot2, ggpubr
RoxygenNote: 7.1.1
Suggests: 
    knitr,
    rmarkdown
VignetteBuilder: knitr
Depends: 
    R (>= 3.5.0)