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2024 => 2025
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‎PyCO2SYS/__init__.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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#
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# This program is free software: you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by

‎PyCO2SYS/bio.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Seawater properties with primarily biological consequences."""
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‎PyCO2SYS/buffers.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Calculate various buffer factors of the marine carbonate system."""
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from jax import numpy as np

‎PyCO2SYS/constants.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Define universal constants."""
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from jax import numpy as np

‎PyCO2SYS/convert.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""
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PyCO2SYS.convert
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================

‎PyCO2SYS/engine.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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import itertools
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import warnings
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from collections import UserDict

‎PyCO2SYS/equilibria/__init__.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Calculate equilibrium constants from temperature, salinity and pressure."""
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from . import p1atm, pcx

‎PyCO2SYS/equilibria/p1atm.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""
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PyCO2SYS.equilibria.p1atm
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=========================

‎PyCO2SYS/equilibria/pcx.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""
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PyCO2SYS.equilibria.pcx
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=======================

‎PyCO2SYS/gas.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""
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PyCO2SYS.gas
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============

‎PyCO2SYS/meta.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Define metadata about PyCO2SYS."""
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import jax

‎PyCO2SYS/salts.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""
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PyCO2SYS.salts
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==============

‎PyCO2SYS/solubility.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Calculate saturation states of soluble solids."""
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from jax import numpy as np

‎PyCO2SYS/solve/inorganic.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Calculate one new carbonate system variable from various input pairs."""
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import warnings

‎PyCO2SYS/uncertainty.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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"""Define standard uncertainties for propagation."""
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# Define default uncertainties in pK values following OEDG18

‎PyCO2SYS/upsilon.py

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# PyCO2SYS: marine carbonate system calculations in Python.
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# Copyright (C) 2020--2024 Matthew P. Humphreys et al. (GNU GPLv3)
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# Copyright (C) 2020--2025 Matthew P. Humphreys et al. (GNU GPLv3)
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from jax import numpy as np
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from . import constants

‎mkdocs.yml

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site_name: PyCO2SYS
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site_author: Matthew P. Humphreys
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site_description: Marine carbonate system calculations in Python
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copyright: Copyright © 2020-2024 Matthew P. Humphreys (GNU GPLv3)
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copyright: Copyright © 2020-2025 Matthew P. Humphreys (GNU GPLv3)
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# Github repo info
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repo_name: mvdh7/PyCO2SYS

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