Here the user includes de fasta file that wants to process using the following considerations:
SAMPLE_LIBRARY_TREATMENT_PLATFORM_CENTER_L00[0-8]_R[12]_00[0-9].fastq.gz
SAMPLE ID: (Number), i. e., 1, 2, ..., N LIBRARY Date: YYYYMMDD TREATMENT: default, control, treatmentA, etc. PLATFORM used, i. e. ILLUMINA, etc. CENTER, where it was taken: USEC.INMEGEN for example L00[0-8]: lane used L### R[12]: forward (1) or reverse (2) 00[0-9]: fasta file number, just if in a run multiple files were created.
Example file:
13_20150728_default_ILLUMINA_USEC.INMEGEN_L001_R1_001.fastq.gz