ci_test.yml

name: Python package CI/CD

on:
  push:
    branches: [ main, anaconda ]
  pull_request:
    branches: [ main ]
  release:
    types: [published]

jobs:
  tests:
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest, windows-latest]
        python-version: ['3.9', '3.10', '3.11', '3.12']
    steps:
      - name: Checkout repository
        uses: actions/checkout@v3
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v3
        with:
          python-version: ${{ matrix.python-version }}
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip setuptools wheel cython
          pip install "numpy>=1.16.3" --only-binary=numpy "scipy>=1.11.3" --only-binary=scipy
          pip install black pytest pytest-cov
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
        shell: bash
      - name: Build Cython extensions
        run: python setup.py build_ext --inplace
      - name: Lint with black
        run: |
          black . --check
      - name: Install package in editable mode
        run: pip install -e .
        shell: bash
      - name: Run tests with pytest
        run: |
          pytest --cov=fastshermanmorrison --cov-report xml:coverage.xml tests/
      - name: Upload coverage to Codecov
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          files: ./coverage.xml
          flags: unittests
          name: codecov-umbrella
          fail_ci_if_error: true

  build:
    needs: tests
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v3
        with:
          python-version: '3.x'
      - name: Install build dependencies
        run: |
          python -m pip install --upgrade pip setuptools wheel cython cibuildwheel==2.3.1 setuptools_scm
      - name: Install project dependencies
        run: |
          pip install "numpy>=1.16.3" --only-binary=numpy "scipy>=1.2.0" --only-binary=scipy
          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
      - name: Build wheels using cibuildwheel
        run: cibuildwheel --output-dir dist
        env:
          CIBW_BEFORE_BUILD: "pip install numpy>=1.16.3 --only-binary=numpy scipy>=1.2.0 --only-binary=scipy"
          CIBW_BUILD_VERBOSITY: 1
          CIBW_SKIP: "pp* cp27-* cp35-* cp36-* cp37-* cp38-* *-win32 *-manylinux_i686 *-musllinux_i686 *-macosx_10_6_intel *-macosx_10_9_intel *-macosx_10_10_intel *-macosx_10_11_intel *-macosx_10_12_intel *-macosx_10_13_intel *-macosx_10_14_intel *-macosx_10_15_intel"
          CIBW_ARCHS: "x86_64"
          CIBW_ARCHS_MACOS: "x86_64 arm64"
          CIBW_MANYLINUX_X86_64_IMAGE: "manylinux2014"
      - name: Build source distribution
        run: python setup.py sdist
      - uses: actions/upload-artifact@v3
        with:
          name: dist
          path: |
            ./dist/*.whl
            ./dist/*.tar.gz

  deploy:
    needs: build
    runs-on: ubuntu-latest
    if: github.event_name == 'release'
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v3
        with:
          python-version: '3.x'
      - name: Download built distributions
        uses: actions/download-artifact@v3
        with:
          name: dist
          path: ./dist/
      - name: Publish to PyPI
        run: |
          python -m pip install --upgrade twine
          python -m twine upload ./dist/*
        env:
          TWINE_USERNAME: __token__
          TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
          TWINE_REPOSITORY_URL: https://upload.pypi.org/legacy/
          #TWINE_PASSWORD: ${{ secrets.TEST_PYPI_API_TOKEN }}
          #TWINE_REPOSITORY_URL: https://test.pypi.org/legacy/

  conda-package:
    runs-on: ubuntu-latest
    needs: [tests, build]
    steps:
      - name: Set CONDA_GIT_BRANCH environment variable
        run: echo "CONDA_GIT_BRANCH=$(echo ${GITHUB_REF#refs/heads/})" >> $GITHUB_ENV
      - uses: actions/checkout@v3
      - name: Set up conda
        uses: conda-incubator/setup-miniconda@v2
        with:
          auto-update-conda: true
          conda-channels: anaconda, conda-forge
      - name: Install conda-build and anaconda-client
        run: |
          conda install conda-build anaconda-client
      - name: Build conda package
        run: |
          conda config --set anaconda_upload no
          conda build recipe/
      - name: Upload conda package to Anaconda Cloud
        if: github.event_name == 'release'
        run: |
          echo "Uploading to Anaconda Cloud..."
          source activate base
          anaconda -t ${{ secrets.ANACONDA_API_TOKEN }} upload $(conda build recipe/ --output)
        env:
          ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }}