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Add JRC2018 templates of different resolution #47

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shuocao818 opened this issue Jul 29, 2020 · 1 comment
Open

Add JRC2018 templates of different resolution #47

shuocao818 opened this issue Jul 29, 2020 · 1 comment

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@shuocao818
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shuocao818 commented Jul 29, 2020 •
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Hello,

Current available JRC2018U template has a resolution of 0.38x0.38x0.38um that have 456 stacks. It would be nice to have a template at the resolution of 0.519x0.519x1um that have 174 stacks (https://www.dropbox.com/s/cjcslfa2daxptu8/JRC2018_UNISEX_20x_HR.nrrd?dl=0) so that .nrrd neuron objects can be generated for driver line searching in MCFO Color depth MIP dataset.

Thanks!
@jefferis
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In the meantime, something like this should work:

JRC2018Umip=templatebrain("JRC2018Umip", dims = c(1210,566,174),
  voxdims = c(0.519,0.519,1), units = "microns")

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@jefferis @shuocao818