Skip to content

Commit 825abe1

Browse files
committed
replace all content with content derived from hash 8a4e9a1, final updates to site before making changes for R1.1
1 parent 8560aef commit 825abe1

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

49 files changed

+642
-1460
lines changed

docs/changelog/knownissues.md

Lines changed: 134 additions & 238 deletions
Large diffs are not rendered by default.

docs/changelog/pending.md

Lines changed: 141 additions & 430 deletions
Large diffs are not rendered by default.

docs/changelog/releasenotes.md

Lines changed: 0 additions & 458 deletions
This file was deleted.

docs/changelog/versions/R1.md

Lines changed: 181 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,181 @@
1+
# Version: R1.0
2+
<p style="font-size: 1.1em">Release date: 2025-06-26</p>
3+
4+
## Counts
5+
* **Total number of participants queried from DB:** 1,426
6+
* Total number of visits:
7+
* All: 2,207
8+
* V01: 1,426
9+
* V02: 660
10+
* V03: 121
11+
* By Sex (V02/V03 visit done):
12+
* Female: 328
13+
* Male: 338
14+
15+
## Exclusion Criteria & Filters
16+
17+
### General Rules Applied to All Data
18+
- For all participants with only one active V01 visit, sex is changed from "Male/Female" to “Other”
19+
- All empty strings (“”) or missing values are replaced with the default ReproSchema-compliant string “n/a”
20+
- Some fields can have out-of-range values considered “extreme” that are changed to “n/a" - see [Filtered Field Values](#filtered-field-values).
21+
22+
### Static Element Exclusions
23+
Static elements are precisely identified hard-coded elements. Exclusions applied to static elements in the current release are as follows:
24+
25+
#### Participant Exclusions
26+
The current data release excludes participants with a 'Postnatal Recruitment' visit as well as Multiple Birth Participants (to be included in [Release 2.0](../pending.md#release-20-release-date-tba)).
27+
28+
#### Instrument & Field Exclusions
29+
30+
Expand the following section to see a list of instruments and instrument fields excluded from the current release:
31+
32+
<p>
33+
<div id="static-exclusions" class="table-banner" onclick="toggleCollapse(this)">
34+
<span class="text-with-link">
35+
<span class="text">Excluded Instruments & Instrument Fields</i></span>
36+
<a class="anchor-link" href="#static-exclusions" title="Copy link">
37+
<i class="fa-solid fa-link"></i>
38+
</a>
39+
</span>
40+
<span class="arrow">▸</span>
41+
</div>
42+
<div class="table-collapsible-content">
43+
<div style="display: flex; gap: 10px; justify-content: flex-start; align-items: flex-start;">
44+
<div>
45+
<table style="width: 100%; border-collapse: collapse; table-layout: fixed; font-size: 14px">
46+
<caption style="font-size: 1.2em; font-style: normal; padding-bottom: 5px;"><strong>Excluded Instruments</strong></caption>
47+
<thead>
48+
<tr>
49+
<th style="width: 40%; text-align: center;">Instrument</th>
50+
<th style="width: 30%; text-align: center;">Table Name</th>
51+
</tr>
52+
</thead>
53+
<tbody>
54+
<tr><td style="word-wrap: break-word; white-space: normal;">Biosensor Receipt Form</td><td style="word-wrap: break-word; white-space: normal;">sens_ch_rcpt</td></tr>
55+
<tr><td style="word-wrap: break-word; white-space: normal;">EEG Acquisition Checklist - Form</td><td style="word-wrap: break-word; white-space: normal;">eeg_ch_chkl</td></tr>
56+
<tr><td style="word-wrap: break-word; white-space: normal;">EEG Acquisition Checklist - Reattempt 1</td><td style="word-wrap: break-word; white-space: normal;">eeg_ch_chkl_1</td></tr>
57+
<tr><td style="word-wrap: break-word; white-space: normal;">EEG Acquisition Checklist - Reattempt 2</td><td style="word-wrap: break-word; white-space: normal;">eeg_ch_chkl_2</td></tr>
58+
<tr><td style="word-wrap: break-word; white-space: normal;">GABI Setup</td><td style="word-wrap: break-word; white-space: normal;">nt_pa_gabi_setup</td></tr>
59+
<tr><td style="word-wrap: break-word; white-space: normal;">GABI Receipt</td><td style="word-wrap: break-word; white-space: normal;">nt_pa_gabi_rcpt</td></tr>
60+
<tr><td style="word-wrap: break-word; white-space: normal;">ERICA 3–7 Months</td><td style="word-wrap: break-word; white-space: normal;">mh_cg_erica_3_7m</td></tr>
61+
<tr><td style="word-wrap: break-word; white-space: normal;">ERICA 7–9 Months</td><td style="word-wrap: break-word; white-space: normal;">mh_cg_erica_7_9m</td></tr>
62+
<tr><td style="word-wrap: break-word; white-space: normal;">ERICA FCM Admin 3–7 Months</td><td style="word-wrap: break-word; white-space: normal;">mh_cg_erica_fcm_adm_3_7m</td></tr>
63+
<tr><td style="word-wrap: break-word; white-space: normal;">ERICA FCM Admin 7–9 Months</td><td style="word-wrap: break-word; white-space: normal;">mh_cg_erica_fcm_adm_7_9m</td></tr>
64+
<tr><td style="word-wrap: break-word; white-space: normal;">MRI Data Summary Form</td><td style="word-wrap: break-word; white-space: normal;">mri_ra_chkl_data</td></tr>
65+
<tr><td style="word-wrap: break-word; white-space: normal;">MRI Scan Session Summary Form</td><td style="word-wrap: break-word; white-space: normal;">mri_ra_chkl_scan</td></tr>
66+
<tr><td style="word-wrap: break-word; white-space: normal;">MRI Pre/Post Scan Prep</td><td style="word-wrap: break-word; white-space: normal;">mri_ra_prep</td></tr>
67+
<tr><td style="word-wrap: break-word; white-space: normal;">NIH Baby ToolBox</td><td style="word-wrap: break-word; white-space: normal;">ncl_ch_nbtb</td></tr>
68+
<tr><td style="word-wrap: break-word; white-space: normal;">Participant Feedback Form</td><td style="word-wrap: break-word; white-space: normal;">adm_cg_fb</td></tr>
69+
<tr><td style="word-wrap: break-word; white-space: normal;">RA Feedback</td><td style="word-wrap: break-word; white-space: normal;">adm_ra_fb</td></tr>
70+
<tr><td style="word-wrap: break-word; white-space: normal;">Participant Alerts</td><td style="word-wrap: break-word; white-space: normal;">admin_alert</td></tr>
71+
<tr><td style="word-wrap: break-word; white-space: normal;">TLFB (Timeline Follow Back) Summary Parser</td><td style="word-wrap: break-word; white-space: normal;">pex_ch_tlfb</td></tr>
72+
<tr><td style="word-wrap: break-word; white-space: normal;">Visit Level Data</td><td style="word-wrap: break-word; white-space: normal;">adm_fd_visitdata</td></tr>
73+
<tr><td style="word-wrap: break-word; white-space: normal;">Visit Start</td><td style="word-wrap: break-word; white-space: normal;">visit_start</td></tr>
74+
<tr><td style="word-wrap: break-word; white-space: normal;">Urgent Events</td><td style="word-wrap: break-word; white-space: normal;">adm_fd_urgent</td></tr>
75+
<tr><td style="word-wrap: break-word; white-space: normal;">Transitions in Care Questionnaire</td><td style="word-wrap: break-word; white-space: normal;">sed_cg_tic</td></tr>
76+
</tbody>
77+
</table>
78+
</div>
79+
80+
<div>
81+
<table style="width: 100%; border-collapse: collapse; table-layout: fixed; font-size: 14px">
82+
<caption style="font-size: 1.2em; font-style: normal; padding-bottom: 5px;"><strong>Excluded Instrument Fields</strong></caption>
83+
<thead>
84+
<tr>
85+
<th style="width: 30%; text-align: center;">Field</th>
86+
<th style="width: 30%; text-align: center;">Field Name</th>
87+
</tr>
88+
</thead>
89+
<tbody>
90+
<tr><td style="word-wrap: break-word; white-space: normal;">Examiner</td><td style="word-wrap: break-word; white-space: normal;">Examiner</td></tr>
91+
<tr><td style="word-wrap: break-word; white-space: normal;">Date of Birth</td><td style="word-wrap: break-word; white-space: normal;">DOB</td></tr>
92+
<tr><td style="word-wrap: break-word; white-space: normal;">Informant</td><td style="word-wrap: break-word; white-space: normal;">informant</td></tr>
93+
<tr><td style="word-wrap: break-word; white-space: normal;">Validity</td><td style="word-wrap: break-word; white-space: normal;">validity</td></tr>
94+
<tr><td style="word-wrap: break-word; white-space: normal;">Duration</td><td style="word-wrap: break-word; white-space: normal;">duration</td></tr>
95+
<tr><td style="word-wrap: break-word; white-space: normal;">Window Difference</td><td style="word-wrap: break-word; white-space: normal;">window_difference</td></tr>
96+
<tr><td style="word-wrap: break-word; white-space: normal;">Start timestamp</td><td style="word-wrap: break-word; white-space: normal;">timestamp_start</td></tr>
97+
<tr><td style="word-wrap: break-word; white-space: normal;">Stop timestamp</td><td style="word-wrap: break-word; white-space: normal;">timestamp_stop</td></tr>
98+
<tr><td style="word-wrap: break-word; white-space: normal;">REDCap timestamp</td><td style="word-wrap: break-word; white-space: normal;">timestamp_redcap_locked</td></tr>
99+
<tr><td style="word-wrap: break-word; white-space: normal;">Visit Data</td><td style="word-wrap: break-word; white-space: normal;">visit_stage removed from the visit_data category</td></tr>
100+
<tr><td style="word-wrap: break-word; white-space: normal;">Height/Weight/Head Circumference</td><td style="word-wrap: break-word; white-space: normal;">ph_ch_anthro – BMI-related fields removed</td></tr>
101+
<tr><td style="word-wrap: break-word; white-space: normal;">Breast Feeding History</td><td style="word-wrap: break-word; white-space: normal;">ph_cg_phx_i_bfh – All fields except 001 excluded</td></tr>
102+
<tr><td style="word-wrap: break-word; white-space: normal;">Clinical Alerts</td><td style="word-wrap: break-word; white-space: normal;"> </td></tr>
103+
<tr><td style="word-wrap: break-word; white-space: normal;">REDCap Complete status</td><td style="word-wrap: break-word; white-space: normal;">complete</td></tr>
104+
<tr><td style="word-wrap: break-word; white-space: normal;">Scannable codes</td><td style="word-wrap: break-word; white-space: normal;">BioSamples codes, tracking Nos, etc.</td></tr>
105+
<tr><td style="word-wrap: break-word; white-space: normal;">Line fields</td><td style="word-wrap: break-word; white-space: normal;"> </td></tr>
106+
</tbody>
107+
</table>
108+
</div>
109+
</div>
110+
</div>
111+
112+
</p>
113+
114+
#### Filtered Field Values
115+
Some fields can have out-of-range values considered “extreme.” Values outside of the valid ranges listed for the instruments below were filtered, i.e. changed to "n/a."
116+
117+
<table style="width: 100%; border-collapse: collapse; table-layout: fixed;">
118+
<thead>
119+
<tr>
120+
<th style="width: 10%; text-align: center;">Instrument</th>
121+
<th style="width: 10%; text-align: center;">Table Name</th>
122+
<th style="width: 30%; text-align: center;">Field</th>
123+
<th style="width: 30%; text-align: center;">Valid Range</th>
124+
</tr>
125+
</thead>
126+
<tbody>
127+
<td colspan="1" rowspan="4">Growth</td>
128+
<td colspan="1" rowspan="4"><code>ph_ch_anthro</code></td>
129+
<tr>
130+
<td>Length (<code>len_001_i_03</code>)</td>
131+
<td>30 to 130 cm</td>
132+
</tr>
133+
<tr>
134+
<td>Head Circumference (<code>head_001_i_03</code>)</td>
135+
<td>25 to 55 cm</td>
136+
</tr>
137+
<tr>
138+
<td>Weight (<code>wei_001_i_03</code>)</td>
139+
<td>0.5 to 30 kg</td>
140+
</tr>
141+
<td colspan="1" rowspan="5">Healthv2 Inf</td>
142+
<td colspan="1" rowspan="5"><code>pex_bm_healthv2_inf</code></td>
143+
<tr>
144+
<td><code>001_i_01</code></td>
145+
<td>≤ 16</td>
146+
</tr>
147+
<tr>
148+
<td><code>001_i_02</code></td>
149+
<td>≤ 66</td>
150+
</tr>
151+
<tr>
152+
<td><code>002</code></td>
153+
<td>12 - 51</td>
154+
</tr>
155+
<tr>
156+
<td><code>002_i_01</code></td>
157+
<td>30 - 130</td>
158+
</tr>
159+
</tbody>
160+
</table>
161+
162+
### Dynamic Element Exclusions
163+
164+
In contrast to static elements (e.g. participants, instruments, and instrument fields), which are fixed and consistently structured, dynamic elements refer to data that are programmatically derived, conditionally included, or vary based on participant behavior or system context. These elements may include calculated fields, system-generated metadata, or selectively captured measures such as biospecimens, geocoded data, and direct REDCap submissions. The following filters were applied to exclude specific dynamic elements from this release, based on participant status, visit timing, data completeness, and domain-specific conditions:
165+
166+
<ul>
167+
<b>Participant Filters:</b>
168+
<li>No brain rating or brain rating noted “atypical” are not selected</li>
169+
<li>Only active participants and sessions are selected</li>
170+
</ul>
171+
<ul><b>Visit Filters:</b>
172+
<li>Only visits whose 'LaunchPad Complete' Status was set to 'Complete' before July 1st, 2024 are included</li>
173+
</ul>
174+
<ul>
175+
<b>Domain Filters:</b>
176+
<li>BioSpecimens</li>
177+
<li>Geocoding data</li>
178+
<li>Transition in Care</li>
179+
</ul>
180+
181+

docs/css/alerts.css

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -47,6 +47,10 @@
4747
margin-top: 0.8em;
4848
margin-bottom: 0.8em;
4949
}
50+
.alert-collapsible-content b {
51+
color: #6300d3;;
52+
line-height: 1.3;
53+
}
5054
.alert-collapsible-content ul {
5155
margin-top: 1rem;
5256
padding-left: 0.4rem;

docs/css/banners.css

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -74,6 +74,7 @@
7474
margin-bottom: 0.8em;
7575
}
7676
.collapsible-content b {
77+
color: #6300d3;;
7778
line-height: 1.3;
7879
}
7980
.collapsible-content ul {
@@ -94,6 +95,7 @@
9495
line-height: 1;
9596
}
9697
.collapsible-content li b {
98+
color: #6300d3;
9799
line-height: 1;
98100
}
99101

@@ -105,4 +107,5 @@
105107
text-align-last: left;
106108
margin-right: 10px; /* Adds space between text and the arrow */
107109
word-wrap: break-word; /* Ensures text wraps if too long */
108-
}
110+
}
111+

docs/css/collapsible.css

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -41,6 +41,9 @@
4141
margin: 0.8em 0;
4242
line-height: 1.3;
4343
}
44+
.open-collapsible-content b {
45+
color: #6300d3;
46+
}
4447
.open-collapsible-content ul {
4548
margin: 1rem 0 0.5rem 1rem;
4649
padding-left: 0.4rem;
@@ -53,4 +56,4 @@
5356
}
5457
.open-collapsible-content li b {
5558
color: #0077cc;
56-
}
59+
}

docs/css/custom.css

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -204,4 +204,6 @@ pre.helper-code code {
204204
}
205205
.info-value {
206206
margin: 0;
207-
}
207+
}
208+
209+

docs/css/hoverable_elements.css

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -101,4 +101,5 @@
101101
max-width: 90vw; /* Keep it responsive */
102102
white-space: normal; /* Allow wrapping */
103103
word-wrap: break-word; /* Ensure long words wrap */
104-
}
104+
}
105+

docs/css/issues.css

Lines changed: 1 addition & 51 deletions
Original file line numberDiff line numberDiff line change
@@ -9,7 +9,7 @@
99
color: #474646;
1010
font-weight: bold;
1111
gap: 8px; /* space between emoji and text */
12-
font-size: 0.7em;
12+
font-size: 0.9em;
1313
line-height: 1.1;
1414
border-radius: 6px; /* round edges */
1515
width: 100%;
@@ -25,56 +25,6 @@
2525
.issues-banner .text {
2626
flex: 1; /* text takes remaining space */
2727
}
28-
.issues-banner .badge {
29-
background-color: #fff4ed; /* soft tint of orange */
30-
color: #b45309; /* dark amber text */
31-
border: 1px solid #f97316; /* thin border to match icon color */
32-
border-radius: 9999px; /* pill shape */
33-
font-size: 1em;
34-
font-weight: 600;
35-
padding: 2px 8px;
36-
margin-left: 8px;
37-
white-space: nowrap;
38-
}
39-
.issues-collapsible-content {
40-
max-height: 0;
41-
overflow: hidden;
42-
transition: max-height 0.3s ease-out;
43-
background-color: #f96f0d13;
44-
border-top: none;
45-
padding: 0 0;
46-
border-radius: 0 0 5px 5px;
47-
margin-bottom: 10px; /* Adds spacing below the section */
48-
width: 100%;
49-
display: block;
50-
overflow-x: auto;
51-
}
52-
.issues-collapsible-content p {
53-
display: inline-block;
54-
padding: 5px 10px;
55-
font-size: 0.9em;
56-
line-height: 1.3;
57-
margin-top: 0.5em;
58-
margin-bottom: 0;
59-
}
60-
.issues-collapsible-content ul {
61-
display: inline-block;
62-
padding: 0 10px; /* remove default left indentation */
63-
margin: 0.2em 0; /* small top/bottom spacing only */
64-
font-size: 0.9em;
65-
line-height: 1.2;
66-
list-style-position: inside;
67-
}
68-
69-
.issues-collapsible-content li {
70-
margin: 0; /* removes extra space between list items */
71-
padding: 0; /* keep list tight */
72-
}
73-
.issues-collapsible-content.open {
74-
max-height: none;
75-
}
76-
77-
7828

7929
/* Pill base */
8030
.pill {

0 commit comments

Comments
 (0)