diff --git a/README.md b/README.md index 7c9d9e7..03cb7f0 100644 --- a/README.md +++ b/README.md @@ -27,29 +27,29 @@ pip install git+https://github.com/ncaptier/stabilized-ica.git We provide three jupyter notebooks for an illustration with transcriptomic data : -* [ICA decomposition with stabilized ICA](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/transcriptomic_ICA.ipynb) -* [Stability of ICA components accross several NSCLC cohorts](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/stability_study.ipynb) -* [Stabilized ICA for single-cell expression data (cell cycle)](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/cell_cycle_ICA.ipynb) +* [ICA decomposition with stabilized ICA](https://github.com/ncaptier/stabilized-ica/blob/master/examples/transcriptomic_ICA.ipynb) +* [Stability of ICA components accross several NSCLC cohorts](https://github.com/ncaptier/stabilized-ica/blob/master/examples/stability_study.ipynb) +* [Stabilized ICA for single-cell expression data (cell cycle)](https://github.com/ncaptier/stabilized-ica/blob/master/examples/cell_cycle_ICA.ipynb) We provide one jupyter notebook for an illustration with EEG/MEG data : -* [Detecting artifacts and biological phenomena on MEG data with stabilized-ica](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/sica_MEG.ipynb) +* [Detecting artifacts and biological phenomena on MEG data with stabilized-ica](https://github.com/ncaptier/stabilized-ica/blob/master/examples/sica_MEG.ipynb) We provide one jupyter notebook for an illustration of the integration of stabilized-ica into scikit-learn Machine learning pipelines: -* [MNIST classification with stabilized-ica and multinomial logistic regression](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/MNIST_classification.ipynb) +* [MNIST classification with stabilized-ica and multinomial logistic regression](https://github.com/ncaptier/stabilized-ica/blob/master/examples/MNIST_classification.ipynb) ## Data The data set which goes with the jupyter -notebook ["ICA decomposition with stabilized ICA"](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/transcriptomic_ICA.ipynb) +notebook ["ICA decomposition with stabilized ICA"](https://github.com/ncaptier/stabilized-ica/blob/master/examples/transcriptomic_ICA.ipynb) can be found in the .zip -file [data.zip](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/data.zip). +file [data.zip](https://github.com/ncaptier/stabilized-ica/blob/master/examples/data.zip). Please extract locally the data set before running the notebook. For the jupyter -notebooks ["Stability of ICA components accross several NSCLC cohorts"](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/stability_study.ipynb) -and ["Stabilized ICA for single-cell expression data (cell cycle)"](https://github.com/ncaptier/stabilized-ica/blob/feature_sklearn_api/examples/cell_cycle_ICA.ipynb) +notebooks ["Stability of ICA components accross several NSCLC cohorts"](https://github.com/ncaptier/stabilized-ica/blob/master/examples/stability_study.ipynb) +and ["Stabilized ICA for single-cell expression data (cell cycle)"](https://github.com/ncaptier/stabilized-ica/blob/master/examples/cell_cycle_ICA.ipynb) please note that you will have to load the data yourself in order to run them (all the necessary links are reported on the notebooks).