test-coverage.yml

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

name: test-coverage

jobs:
  test-coverage:
    runs-on: macOS-latest
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
    steps:
      - uses: actions/checkout@v3

      - uses: actions/setup-python@v4
        with:
          python-version: '3.11' # Version range or exact version of a Python version to use, using SemVer's version range syntax
          architecture: 'x64' # optional x64 or x86. Defaults to x64 if not specified

      - uses: r-lib/actions/setup-r@v2
        with:
          r-version: "release"

      - uses: r-lib/actions/setup-pandoc@v2

      - name: Install system dependencies (macOS)
        if: runner.os == 'macOS'
        run: |
          brew install pkg-config
          brew install gdal

      - uses: r-lib/actions/setup-r-dependencies@v2
        with:
          extra-packages: any::covr

      - name: Install Python dependencies
        run: |
          reticulate::virtualenv_create("r-reticulate")
          reticulate::virtualenv_install("r-reticulate", "rosetta-soil")
        shell: Rscript {0}

      - name: Test coverage
        run: covr::codecov()
        shell: Rscript {0}