diff --git a/404.html b/404.html index d0d30ba..d249b93 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/LICENSE.html b/LICENSE.html index 69a733b..d763b25 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/authors.html b/authors.html index 8a9c3a1..93d0462 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 @@ -63,13 +63,13 @@

Citation

Soil, Staff PSD (2023). rosettaPTF: R Frontend for Rosetta Pedotransfer Functions. -R package version 0.1.3, https://ncss-tech.github.io/rosettaPTF/, https://github.com/ncss-tech/rosettaPTF. +R package version 0.1.4, https://ncss-tech.github.io/rosettaPTF/, https://github.com/ncss-tech/rosettaPTF. 

@Manual{,
   title = {rosettaPTF: R Frontend for Rosetta Pedotransfer Functions},
   author = {{Soil} and Plant Science Division Staff},
   year = {2023},
-  note = {R package version 0.1.3, https://ncss-tech.github.io/rosettaPTF/},
+  note = {R package version 0.1.4, https://ncss-tech.github.io/rosettaPTF/},
   url = {https://github.com/ncss-tech/rosettaPTF},
 }
diff --git a/index.html b/index.html index e806716..5c4460b 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/news/index.html b/news/index.html index eb0a801..42fdc65 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/pkgdown.yml b/pkgdown.yml index 1726bfc..158d82e 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -2,5 +2,5 @@ pandoc: 2.19.2 pkgdown: 2.0.7 pkgdown_sha: ~ articles: {} -last_built: 2023-11-21T16:04Z +last_built: 2023-12-27T21:24Z diff --git a/reference/MUKEY_PROP.html b/reference/MUKEY_PROP.html index 343edb0..a3ae39d 100644 --- a/reference/MUKEY_PROP.html +++ b/reference/MUKEY_PROP.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/MUKEY_WCS.html b/reference/MUKEY_WCS.html index 0488415..1d3d74f 100644 --- a/reference/MUKEY_WCS.html +++ b/reference/MUKEY_WCS.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/Rosetta-class.html b/reference/Rosetta-class.html index 175dd41..fbc1c55 100644 --- a/reference/Rosetta-class.html +++ b/reference/Rosetta-class.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/SoilDataFromArray.html b/reference/SoilDataFromArray.html index 9e98ca3..32c2d7d 100644 --- a/reference/SoilDataFromArray.html +++ b/reference/SoilDataFromArray.html @@ -18,7 +18,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/ann_predict.html b/reference/ann_predict.html index f8e8523..8c179ec 100644 --- a/reference/ann_predict.html +++ b/reference/ann_predict.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/find_python.html b/reference/find_python.html index f450062..f56054b 100644 --- a/reference/find_python.html +++ b/reference/find_python.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/get_rosetta_module.html b/reference/get_rosetta_module.html index 01eee35..f1c73f3 100644 --- a/reference/get_rosetta_module.html +++ b/reference/get_rosetta_module.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/index.html b/reference/index.html index 2fc9a70..66d5387 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/install_rosetta.html b/reference/install_rosetta.html index d534dc2..ea82f4a 100644 --- a/reference/install_rosetta.html +++ b/reference/install_rosetta.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 @@ -58,6 +58,8 @@

Install Rosetta Python package

method = "auto", conda = "auto", pip = TRUE, + user = FALSE, + system = FALSE, arcpy_path = getOption("rosettaPTF.arcpy_path") ) @@ -80,6 +82,14 @@

Arguments

logical. Use pip for package installation? Default: TRUE. This is only relevant when Conda environments are used, as otherwise packages will be installed from the Conda repositories.

+
user
+

logical. Default: FALSE. Pass --user flag. This should only be done if other installation methods fail and it is impossible to use a virtual environment.

+ + +
system
+

logical. Default: FALSE. If TRUE, try installing to system (user) site library with system() and set reticulate to use system Python.

+ +
arcpy_path

Argument passed to find_python(). Path to ArcGIS Pro Python installation e.g. ``. Set as NULL (default) to prevent use of ArcGIS Pro instance.

diff --git a/reference/predict.Rosetta.html b/reference/predict.Rosetta.html index d97aa68..455a83d 100644 --- a/reference/predict.Rosetta.html +++ b/reference/predict.Rosetta.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/rosettaPTF-package.html b/reference/rosettaPTF-package.html index 20f6009..ed43924 100644 --- a/reference/rosettaPTF-package.html +++ b/reference/rosettaPTF-package.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/rosetta_module_available.html b/reference/rosetta_module_available.html index edef04e..c7882cb 100644 --- a/reference/rosetta_module_available.html +++ b/reference/rosetta_module_available.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 diff --git a/reference/run_rosetta.html b/reference/run_rosetta.html index 6719464..7d4ad5a 100644 --- a/reference/run_rosetta.html +++ b/reference/run_rosetta.html @@ -17,7 +17,7 @@ rosettaPTF - 0.1.3 + 0.1.4 @@ -68,8 +68,9 @@

Run rosetta() method from Python module

vars = NULL, rosetta_version = 3, cores = 1, - file = paste0(tempfile(), ".grd"), - nrows = nrow(soildata), + core_thresh = 20000L, + file = paste0(tempfile(), ".tif"), + nrows = nrow(soildata)/(terra::ncell(soildata)/core_thresh), overwrite = TRUE ) @@ -79,8 +80,9 @@

Run rosetta() method from Python module

vars = NULL, rosetta_version = 3, cores = 1, - file = paste0(tempfile(), ".grd"), - nrows = nrow(soildata), + core_thresh = 20000L, + file = paste0(tempfile(), ".tif"), + nrows = nrow(soildata)/(terra::ncell(soildata)/core_thresh), overwrite = TRUE ) @@ -90,8 +92,9 @@

Run rosetta() method from Python module

vars = NULL, rosetta_version = 3, cores = 1, - file = paste0(tempfile(), ".grd"), - nrows = nrow(soildata), + core_thresh = 20000L, + file = paste0(tempfile(), ".tif"), + nrows = nrow(soildata)/(terra::ncell(soildata)/core_thresh), overwrite = TRUE ) @@ -118,12 +121,16 @@

Arguments

number of cores; used only for processing SpatRaster or Raster* input

+
core_thresh
+

Magic number for determining processing chunk size. Default 20000L. Used to calculate default nrows

+ +
file

path to write incremental raster processing output for large inputs that do not fit in memory; passed to terra::writeStart() and used only for processing SpatRaster or Raster* input; defaults to a temporary file created by tempfile() if needed

nrows
-

number of rows to use per block; passed to terra::readValues() terra::writeValues(); used only for processing SpatRaster or Raster* input; defaults to number of rows in dataset if needed

+

number of rows to use per block chunk; passed to terra::readValues() and terra::writeValues(); used only for processing SpatRaster or Raster* inputs. Defaults to the total number of rows divided by the number of cells divided by core_thresh.

overwrite