mynewworkflow.json

{
    "1": {
        "category": "preprocessing",
        "function": "intensity_normalization",
        "parameter_values": {
            "scaling_param": [
                3.0,
                15.0
            ]
        },
        "parent": 0
    },
    "2": {
        "category": "preprocessing",
        "function": "edge_preserving_smoothing",
        "parent": 1
    },
    "3": {
        "category": "core",
        "function": "filament_filter_3D",
        "parameter_values": {
            "cutoff": 0.15,
            "sigmas": [
                2.0
            ]
        },
        "parent": 2
    },
    "4": {
        "category": "core",
        "function": "filament_filter_3D",
        "parameter_values": {
            "cutoff": 0.05,
            "sigmas": [
                1.0
            ]
        },
        "parent": 2
    },
    "5": {
        "category": "core",
        "function": "merge_segmentation",
        "parent": [
            3,
            4
        ]
    },
    "6": {
        "category": "postprocessing",
        "function": "size_filter",
        "parameter_values": {
            "method": "3D",
            "min_size": 5
        },
        "parent": 5
    }
}