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Add check for .csv ending files that appear tab-separated #147

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alyssadai opened this issue Apr 3, 2024 · 1 comment
Open

Add check for .csv ending files that appear tab-separated #147

alyssadai opened this issue Apr 3, 2024 · 1 comment
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_flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again usability Issue affecting user or developer experience.

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@alyssadai
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The current error message when this happens states that expected columns are missing, which is a bit misleading / confusing. We can try to catch and let the user know when the file ending and file separator appear incongruous.

Can borrow code from:
https://github.com/neurobagel/bagel-cli/blob/16cf4b7860a2047c32116d280e5b6493a9be8d9a/bagel/pheno_utils.py#L42-L70

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We want to keep our issues up to date and active. This issue hasn't seen any activity in the last 75 days.
We have applied the _flag:stale label to indicate that this issue should be reviewed again.
When you review, please reread the spec and then apply one of these three options:

  • prioritize: apply the flag:schedule label to suggest moving this issue into the backlog now
  • close: if the issue is no longer relevant, explain why (give others a chance to reply) and then close.
  • archive: sometimes an issue has important information or ideas but we won't work on it soon. In this case
    apply the someday label to show that this won't be prioritized. The stalebot will ignore issues with this
    label in the future. Use sparingly!

@github-actions github-actions bot added the _flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again label Jun 19, 2024
@surchs surchs added usability Issue affecting user or developer experience. and removed maint:usability labels Dec 16, 2024
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Labels
_flag:stale [BOT ONLY] Flag issue that hasn't been updated in a while and needs to be triaged again usability Issue affecting user or developer experience.
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