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main.yml
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name: "Build and unit tests"
concurrency:
group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.type }}
cancel-in-progress: true
on:
pull_request:
paths:
- "**"
# - "**.py"
# - "**.pxd"
# - "**.pyx"
push:
branches: [main]
paths:
- "**.py"
tags:
- "v*.*.*"
workflow_dispatch:
env:
INSTALLDIR: "build-install"
CCACHE_DIR: "${{ github.workspace }}/.ccache"
jobs:
build_and_test:
name: Meson build ${{ matrix.os }} - py${{ matrix.python-version }}
timeout-minutes: 20
strategy:
fail-fast: false
matrix:
os: [ubuntu-22.04, macos-latest]
python-version: [3.8, 3.9, "3.10"]
poetry-version: [1.3.0]
runs-on: ${{ matrix.os }}
defaults:
run:
shell: bash
env:
# to make sure coverage/test command builds cleanly
FORCE_SUBMODULE: True
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Setup Python ${{ matrix.python-version }}
uses: actions/setup-python@v4.6.1
with:
python-version: ${{ matrix.python-version }}
architecture: "x64"
cache: "pip"
cache-dependency-path: "requirements.txt"
- name: show-gcc
run: |
gcc --version
- name: Install Ccache for MacOSX
if: ${{ matrix.os == 'macos-latest'}}
run: |
brew install ccache
- name: Install packages for Ubuntu
if: ${{ matrix.os == 'ubuntu-22.04'}}
run: |
sudo apt-get update
sudo apt-get install -y libopenblas-dev libatlas-base-dev liblapack-dev gfortran libgmp-dev libmpfr-dev libsuitesparse-dev ccache libmpc-dev
- name: Install Python packages
run: |
python -m pip install -r build_requirements.txt
python -m pip install spin
python -m pip install -r test_requirements.txt
- name: Prepare compiler cache
id: prep-ccache
shell: bash
run: |
mkdir -p "${CCACHE_DIR}"
echo "dir=$CCACHE_DIR" >> $GITHUB_OUTPUT
NOW=$(date -u +"%F-%T")
echo "timestamp=${NOW}" >> $GITHUB_OUTPUT
- name: Setup compiler cache
uses: actions/cache@v3
id: cache-ccache
# Reference: https://docs.github.com/en/actions/guides/caching-dependencies-to-speed-up-workflows#matching-a-cache-key
# NOTE: The caching strategy is modeled in a way that it will always have a unique cache key for each workflow run
# (even if the same workflow is run multiple times). The restore keys are not unique and for a partial match, they will
# return the most recently created cache entry, according to the GitHub Action Docs.
with:
path: ${{ steps.prep-ccache.outputs.dir }}
# Restores ccache from either a previous build on this branch or on main
key: ${{ github.workflow }}-${{ matrix.python-version }}-ccache-linux-${{ steps.prep-ccache.outputs.timestamp }}
# This evaluates to `Linux Tests-3.9-ccache-linux-` which is not unique. As the CI matrix is expanded, this will
# need to be updated to be unique so that the cache is not restored from a different job altogether.
restore-keys: |
${{ github.workflow }}-${{ matrix.python-version }}-ccache-linux-
- name: Setup build and install scikit-tree
run: |
./spin build -j 2 --forcesubmodule
- name: Ccache performance
shell: bash -l {0}
run: ccache -s
- name: build-path
run: |
echo "$PWD/build-install/"
export INSTALLED_PATH=$PWD/build-install/usr/lib/python${{matrix.python-version}}/site-packages
- name: Run unit tests and coverage
run: |
./spin --help
./spin coverage --help
./spin test --help
./spin coverage
cp $PWD/build-install/usr/lib/python${{matrix.python-version}}/site-packages/coverage.xml ./coverage.xml
- name: debug
run: |
ls $PWD/build-install/usr/lib/python${{matrix.python-version}}/site-packages/
echo "Okay..."
ls $PWD/build
ls ./
- name: Upload coverage stats to codecov
if: ${{ matrix.os == 'ubuntu-22.04' && matrix.python-version == '3.10'}}
uses: codecov/codecov-action@v3
with:
# python spin goes into the INSTALLED path in order to run pytest
files: ./coverage.xml
fail_ci_if_error: true
verbose: true
token: ${{ secrets.CODECOV_TOKEN }}
- name: Save build
uses: actions/upload-artifact@v3
with:
name: sktree-build
path: $PWD/build
build-windows:
name: Meson build Windows
runs-on: windows-2019
steps:
- name: Checkout
uses: actions/checkout@v3
with:
submodules: recursive
- name: Setup Python
uses: actions/setup-python@v4.6.1
with:
python-version: "3.9"
architecture: "x64"
cache: "pip"
cache-dependency-path: "requirements.txt"
- name: install-rtools
run: |
choco install rtools -y --no-progress --force --version=4.0.0.20220206
echo "c:\rtools40\ucrt64\bin;" >> $env:GITHUB_PATH
- name: show-gcc
run: |
gcc --version
- name: pip-packages
run: |
pip install -r build_requirements.txt
pip install spin
- name: openblas-libs
# shell: bash
run: |
# download openblas setup from scipy
# curl https://raw.githubusercontent.com/scipy/scipy/main/tools/cibw_before_build_win.sh -o cibw_before_build_win.sh
# chmod +x cibw_before_build_win.sh
# set -xe
# bash cibw_before_build_win.sh .
# echo "PKG_CONFIG_PATH=c:\opt\64\lib\pkgconfig;" >> $GITHUB_ENV
# Download and install pre-built OpenBLAS library
# Built with mingw-w64, -ucrt -static.
# https://github.com/matthew-brett/openblas-libs/blob/ucrt-build/build_openblas.ps1
choco install unzip -y
choco install wget -y
wget https://github.com/scipy/scipy-ci-artifacts/raw/main/openblas_32_if.zip
unzip -d c:\ openblas_32_if.zip
echo "PKG_CONFIG_PATH=c:\opt\openblas\if_32\64\lib\pkgconfig;" >> $env:GITHUB_ENV
- name: Build
run: |
echo "SCIPY_USE_PROPACK=1" >> $env:GITHUB_ENV
echo "FORCE_SUBMODULE=True" >> $env:GITHUB_ENV
python spin build -j 2
# Necessary because GitHub Actions checks out the repo to D:\ while OpenBLAS
# got installed to C:\ higher up. The copying with `--win-cp-openblas` fails
# when things are split over drives.
# cp C:\opt\64\bin\*.dll $pwd\build-install\Lib\site-packages\scikit-tree\.libs\
# python tools\openblas_support.py --write-init $PWD\build-install\Lib\site-packages\scikit-tree\
- name: test
run: |
python spin test
# release is ran when a release is made on Github
release:
name: Release
runs-on: ubuntu-latest
needs: [build_and_test]
if: startsWith(github.ref, 'refs/tags/')
steps:
- name: Checkout repository
uses: actions/checkout@v3
- name: Setup Python ${{ matrix.python-version }}
uses: actions/setup-python@v4.6.1
with:
python-version: 3.9
architecture: "x64"
- name: Install dependencies
run: |
python -m pip install --progress-bar off --upgrade pip setuptools wheel
python -m pip install --progress-bar off build twine
- name: Prepare environment
run: |
echo "RELEASE_VERSION=${GITHUB_REF#refs/tags/v}" >> $GITHUB_ENV
echo "TAG=${GITHUB_REF#refs/tags/}" >> $GITHUB_ENV
- name: Download package distribution files
uses: actions/download-artifact@v3
with:
name: package
path: dist
# TODO: refactor scripts to generate release notes from `whats_new.rst` file instead
# - name: Generate release notes
# run: |
# python scripts/release_notes.py > ${{ github.workspace }}-RELEASE_NOTES.md
- name: Publish package to PyPI
run: |
twine upload -u ${{ secrets.PYPI_USERNAME }} -p ${{ secrets.PYPI_PASSWORD }} dist/*
- name: Publish GitHub release
uses: softprops/action-gh-release@v1
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
# body_path: ${{ github.workspace }}-RELEASE_NOTES.md
prerelease: ${{ contains(env.TAG, 'rc') }}
files: |
dist/*