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e -iq
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[33mcommit def5bff4972ea8a47c19f98ab904ca09213e8f72[m[33m ([m[1;36mHEAD -> [m[1;32mmaster[m[33m, [m[1;31morigin/master[m[33m, [m[1;31morigin/HEAD[m[33m)[m
Author: timonmerk <timon.merk@charite.de>
Date: Wed Mar 10 17:52:25 2021 +0100
write clean Beijing
[33mcommit 044d2676ca6ac8432dc2b62f7823a058b4c2b429[m
Author: timonmerk <timon.merk@charite.de>
Date: Mon Mar 8 19:43:33 2021 +0100
add option for preload BIDSLayout
[33mcommit c3c39e19b4f8c3ea3b665c3e64a04adb1f18e538[m
Merge: 2a0d848 148f69a
Author: timonmerk <timon.merk@u-blox.com>
Date: Mon Mar 8 19:16:11 2021 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
[33mcommit 2a0d848f8f4c0fe3fbc2ad6787f601a312c4fc7a[m
Author: timonmerk <timon.merk@u-blox.com>
Date: Mon Mar 8 19:15:57 2021 +0100
add function to retrieve electrode positions for channel type
[33mcommit 148f69ae2459970fd37b852167ed3974320c1a61[m
Author: Mousa <mousa.saeed.m@gmail.com>
Date: Mon Mar 8 13:36:14 2021 +0100
Add files via upload
linear model notebook
[33mcommit 2142222d2bf8a45b6f26c69caf79a2e15b59ed31[m
Author: mousa-saeed <mousa.saeed.m@gmail.com>
Date: Fri Mar 5 22:50:51 2021 +0100
self attention needs adoptation
[33mcommit d30862c75bdb3e0373789b3703c1ea5853e95aee[m
Author: Richard Koehler <richard.koehler@outlook.de>
Date: Fri Mar 5 11:22:17 2021 +0100
Update icn_bids.py
Add deleting/renaming channels
[33mcommit bec5df9c39e064394ad0c9261e943e049744eac7[m
Author: Richard Koehler <richard.koehler@outlook.de>
Date: Fri Mar 5 10:56:33 2021 +0100
Update icn_bids.py
Add functionality: rewrite .tsv files
[33mcommit c749e5f82dbf9d643b22c1a62700cdb9c4522826[m
Author: Richard Koehler <richard.koehler@outlook.de>
Date: Thu Mar 4 19:30:02 2021 +0100
Add bids_rewrite_file + PEP-8 correction
[33mcommit 04a0441ad2f68ee8e1a82ea6dff68456cd8aad2d[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Thu Mar 4 13:00:38 2021 +0100
Update add_TTL_and_chtypes_to_BIDS.py
[33mcommit ed6f2b60852400780b07098240df526f5ef7171a[m
Author: mousa-saeed <mousa.saeed.m@gmail.com>
Date: Thu Mar 4 01:54:13 2021 +0100
added Deeplearningarchs folder
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Merge: 7b70b5d b0b04f8
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Wed Mar 3 20:39:51 2021 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
[33mcommit 7b70b5d726af7a544d8c035cca020207304b9503[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Wed Mar 3 20:38:36 2021 +0100
Create add_TTL_and_chtypes_to_BIDS.py
[33mcommit b0b04f8f21afb11671af1506456e1c6a44d748aa[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Wed Feb 24 18:31:26 2021 +0100
speed up sharpwave estimation
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Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Feb 22 08:00:20 2021 +0100
change convolve due to performance speed
[33mcommit b573f9ff51a21b098a4f257e43d2642b835cd995[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Feb 22 07:56:58 2021 +0100
optimize
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Merge: 7657ad7 7e3b146
Author: timonmerk <timon.merk95@gmail.com>
Date: Sat Feb 20 11:42:42 2021 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
[33mcommit 7657ad78aba763b5433de66b6b878a7e178cd408[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Sat Feb 20 11:41:23 2021 +0100
add interpolation
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Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Fri Feb 19 19:39:45 2021 +0100
Add files via upload
[33mcommit f723afa6d4451738274c31cbeb15b64bb5dbd5b3[m
Author: Richard Koehler <richard.koehler@outlook.de>
Date: Fri Feb 19 11:12:34 2021 +0100
Beijing classification code
[33mcommit d5e8f7b60f5234ab20f466fb2fcbde9ed6487c9d[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Feb 16 22:49:47 2021 +0100
add time stamp feature
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Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Feb 16 02:34:46 2021 +0100
bug fix TODO: time adapt in run_analysis.py
[33mcommit 77616e3ef671614c9a1f250cf6b84ce63b820823[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Feb 16 01:52:39 2021 +0100
extract feature modules
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Date: Thu Feb 11 21:12:07 2021 +0100
implement multiprocessing
[33mcommit 2a10318122b5a018e0f712136bf2fcba1d3b0579[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Tue Feb 9 16:53:36 2021 +0100
Update v20_relabeltool_Neumann_Lab.py
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Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Tue Feb 9 16:52:55 2021 +0100
Update v20_relabeltool_Neumann_Lab.py
[33mcommit bef47f360edd67504afa561b6424740cd6884244[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Tue Feb 9 16:03:11 2021 +0100
Add files via upload
[33mcommit 213ed5ee013eaebff69fb4d8041fef5e68eb876f[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Fri Feb 5 12:19:43 2021 +0100
Removed folder from repository
[33mcommit e090baab166b14c8614294c438322963455a1539[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Fri Feb 5 12:17:47 2021 +0100
modularize feature estimation
[33mcommit c085d461de0803dd1dbb691a44e10076f23f3e0d[m
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Date: Thu Feb 4 13:20:49 2021 +0100
add sandbox
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Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Tue Feb 2 19:24:33 2021 +0100
Add write_coordsystem
[33mcommit a637db0dcd1e82f04e0feca053eaeddfd9c8ac0d[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Fri Jan 29 14:12:59 2021 +0100
new settings structure
[33mcommit 54d616ef835e86f55fc1657536bb0f7e5ff68aec[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Fri Jan 29 14:09:23 2021 +0100
add adapted features
[33mcommit be3270af64910709064f4ba2e02a3915a2aed320[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Tue Jan 26 11:07:38 2021 +0100
Add files via upload
[33mcommit 77354038f86ef3e8ed753b1d58ebde219754dd39[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Jan 25 21:00:44 2021 +0100
example read write Peking
[33mcommit 74268ac761ca7d6a7242fba4ab1386d7f3db6b99[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Mon Jan 25 20:58:19 2021 +0100
Add files via upload
[33mcommit a3b81b22d01511f937d8339826193d96b13b8441[m
Author: Jonathan Vanhoecke <72917013+JonathanVHoecke@users.noreply.github.com>
Date: Mon Jan 25 20:36:18 2021 +0100
Add files via upload
[33mcommit 40645b34430b64f05701975a2b173c7f1bcb5065[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Sun Jan 24 17:17:58 2021 +0100
clean stats folder
[33mcommit 8cded528fbaff8a17cb045cfb6b9609dfc758b5a[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Sun Jan 24 17:10:26 2021 +0100
adapt num rand rep
[33mcommit 5f22e43ebd918864302e08ec91ac6746650abf29[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Sun Jan 24 17:07:52 2021 +0100
append cluster wise pval correction
[33mcommit 9f9ab954fda2a530970244d6b254cdaabf086e59[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Fri Jan 22 14:50:28 2021 +0100
add Kalman Filter exploration
[33mcommit 90e1d7b074648043ea4ad04b74467cd87a748baf[m
Author: timonmerk <julian.neumann@charite.de>
Date: Wed Jan 20 14:25:22 2021 +0100
adapt connectomic fix
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Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Jan 19 10:41:46 2021 +0100
add random effect analysis
[33mcommit 566cc3cface29273408fd710f33bfab1faff6080[m
Author: timonmerk <julian.neumann@charite.de>
Date: Mon Jan 18 14:09:30 2021 +0100
add SPM Random Effect Analysis fMRI
[33mcommit c5b8b83eba1637043d254ac3f971e81ed899cc03[m
Author: Mousa <mousa.saeed.m@gmail.com>
Date: Fri Jan 15 01:00:50 2021 +0100
Add files via upload
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Author: Mousa <mousa.saeed.m@gmail.com>
Date: Fri Jan 15 00:48:43 2021 +0100
Create .gitkeep
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Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Jan 12 13:47:22 2021 +0100
update demo file
[33mcommit 7c789505464254136a6cae0311d395d250d32ef3[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Jan 12 13:44:10 2021 +0100
change p val est
[33mcommit c0699871eeb608b775fc2ffd2fd748150d204035[m
Merge: 5878c4b 0464e9f
Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Jan 11 20:18:02 2021 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
[33mcommit 5878c4bff59abb4d0b118d7ff136753832778e50[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Jan 11 20:17:32 2021 +0100
add BIDS MNE workflow example
[33mcommit 0464e9fb4ed0744458b6a135fd96e24be1590e2a[m
Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Thu Jan 7 18:50:01 2021 +0100
quick bugfix
[33mcommit 21557161e6a20da0290f3f9168fd52762ae8e055[m
Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Thu Jan 7 14:38:16 2021 +0100
Update IO + small changes
[33mcommit f499bd68b9766f0442095730e40736918ad70468[m
Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Thu Jan 7 14:36:26 2021 +0100
Restructur run_analysis and introduce new features
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Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Jan 5 18:07:22 2021 +0100
add pyrem
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Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Jan 5 12:01:49 2021 +0100
adapt new BIDS read to pipeline_label
[33mcommit 21b8f1d8e3436f4c9a9dd87f2ffd6fe28950fefa[m
Author: timonmerk <timon.merk95@gmail.com>
Date: Tue Jan 5 11:44:55 2021 +0100
improve comments
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Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Jan 4 22:09:15 2021 +0100
read fs through raw + cleanup
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Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Jan 4 22:02:18 2021 +0100
change coord output to MNE Array info
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Author: timonmerk <timon.merk95@gmail.com>
Date: Mon Jan 4 22:01:26 2021 +0100
change 'none' to python float('nan') check
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Merge: a87c3a8 e782008
Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Mon Jan 4 21:03:55 2021 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
[33mcommit a87c3a8815ccaab3b0939a029953c390aca5a2ff[m
Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Mon Jan 4 21:03:38 2021 +0100
Update IO.py
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Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Mon Jan 4 21:03:19 2021 +0100
delete files for merging
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Date: Mon Jan 4 20:52:40 2021 +0100
delete vscode folder
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Date: Mon Jan 4 20:46:40 2021 +0100
allow suffix and prefix param to be str
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Date: Mon Jan 4 20:34:12 2021 +0100
Update .gitignore
added # intellij configs
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Date: Mon Jan 4 19:23:43 2021 +0100
small updates
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Date: Wed Dec 23 15:42:22 2020 +0100
Create demo_events.ipynb
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Date: Wed Dec 23 15:08:17 2020 +0100
small function updates
[33mcommit 9d7a7efbf800b51b67470aa5ba088655d118a809[m
Merge: da0d286 eda6b25
Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Mon Dec 21 22:42:22 2020 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
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small updates
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delete gitignore folders
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clean gitignore
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Date: Fri Dec 18 18:44:25 2020 +0100
Small bugfixes, added functions
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Date: Mon Dec 14 16:48:41 2020 +0100
Merge branch 'master' of https://github.com/neuromodulation/icn
[33mcommit a6c1577c1040f31296be0dd4206a9f6d4dbcfaeb[m
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Date: Mon Dec 14 16:48:06 2020 +0100
Update IO.py
[33mcommit 96ca3da0092f2142cf444dc44013370173b94c86[m
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Date: Mon Dec 14 12:43:32 2020 -0300
add baseline correction to pipeline. Still missing saving to bids
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Date: Mon Dec 14 12:40:57 2020 -0300
no rerefenrence is None
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change double forward slash to back slash for SO compatibility
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fix bug when filtering user defined channels
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Date: Thu Dec 10 10:41:27 2020 -0300
rereference based on df_m1 for online implementations
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add read for mne arr
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change mm to m
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change mm to m
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Merge branch 'master' of https://github.com/neuromodulation/icn
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Notebook with functions for movement classification
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add STN to write_BIDS
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small update
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Update write_coordsystem.ipynb
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add write_bids function to IO.py
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add write Pittsburgh coord
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Author: Richard Köhler <70506259+richardkoehler@users.noreply.github.com>
Date: Fri Dec 4 15:52:59 2020 +0100
Create write_coordsystem.ipynb
Write coordsystem.json in BIDS format using electrode localization file
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exclude nb checkpoints new
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exclude nb checkpoints new
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exclude nb checkpoints
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adapt pipeline
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create a new script for function related to data epoching
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improve function docstrings and remove non-related functions
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Update IO.py
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Update plot_ieeg.py
quick update
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Update plot_ieeg.py
updated dependency
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Update settings.json
added "featurelabels" for plotting purposes
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Create plot_ieeg.py
module for plotting ieeg data (e.g. features or time-frequency)
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Update IO.py
get_sess_run_subject updated to inclued task
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adapt pipeline
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adapt run
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start rewrite M1
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segmented CV
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Updated versions
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add label generator py
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add label generator
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CV non shuffle
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Paper adapt
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adapt paper figures
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add distance analysis
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adapt paper Figures
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added TTL clean signal dataset Peking
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adapt ECOGSTN plot
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adapt permutation test relative
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check total UPDRS corr with all ch combined
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add corr. analysis
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add EDA pekin
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add EDA peking
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start SW rest detection
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add TF
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Small update
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Removed sys.path.append
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Merge branch 'master' of https://github.com/neuromodulation/icn
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First test runs for preprocessing + LDA pipeline BIDS Berlin
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adapt paper Fig
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all beta all gamma test
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reorganize new
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reorganize
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Delete Ecog model (rnn, cnn, ae, attn).ipynb
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Create .gitkeep
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add best ECOG STN ch
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analyze beta gamma
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add test for using beta and gamma only
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write sub004
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adapt to new BIDS standard
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paper Figures adapt
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stat permutation fix rho
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stat permutation fix
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add stat permutation test
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stat work paper
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added template movement onset
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changes
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add sb plot
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add sb plots
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notebook SW whole cohort
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Pool working for Mov SW
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media split analysis
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reorganize ECOGSTN
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clean up
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write BIDS
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BIDS read