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when including pipeline modules, there is an option of addParams, and it would be ver convinient if such an option also existed for config inclusion.
Usage scenario
Specific use case: variable representing path is used in script to access directory and in config to mout a path.
When overriding the path, the variable get changed only in script while mounting remains the same and a bug occurs due to writing to a non-mounted path
New feature
when including pipeline modules, there is an option of
addParams
, and it would be ver convinient if such an option also existed for config inclusion.Usage scenario
Specific use case: variable representing path is used in script to access directory and in config to mout a path.
When overriding the path, the variable get changed only in script while mounting remains the same and a bug occurs due to writing to a non-mounted path
Suggest implementation
includeConfig './SubP_configs/sra_download.nf.docker.config' addParams(sra_fastq_outdir: "${params.raw_data_dir}/Orig_fq")
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