From c3251e61f5b829f3f7019b3a8bf27588056a89da Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Fri, 22 Sep 2023 21:29:18 +0200
Subject: [PATCH] Add pyproject.toml for sane `snakefmt` excludes, add `.git/`
 to `.gitignore`

See https://github.com/nextstrain/monkeypox/pull/187 for details
And https://github.com/snakemake/snakefmt/issues/202
---
 .gitignore     | 5 ++++-
 pyproject.toml | 3 +++
 2 files changed, 7 insertions(+), 1 deletion(-)
 create mode 100644 pyproject.toml

diff --git a/.gitignore b/.gitignore
index b2c0bb55..021b1e87 100644
--- a/.gitignore
+++ b/.gitignore
@@ -19,7 +19,10 @@ environment*
 env.d/
 
 # Snakemake state dir
-.snakemake
+.snakemake/
+
+# Git dir
+.git/
 
 # Local config overrides
 /config_local.yaml
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 00000000..eec13042
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,3 @@
+[tool.snakefmt]
+include = '\.smk$|^Snakefile'
+exclude = ''