eva.config

//Profile config names for nf-core/configs
params {
    config_profile_description = 'Generic MPI-EVA cluster(s) profile provided by nf-core/configs.'
    config_profile_contact     = 'James Fellows Yates (@jfy133)'
    config_profile_url         = 'https://eva.mpg.de'
}

// Preform work directory cleanup after a successful run
cleanup = true

singularity {
    enabled    = true
    autoMounts = true
}

process {
    executor       = 'sge'
    penv           = 'smp'
    queue          = 'all.q'
    clusterOptions = { "-S /bin/bash -V -j y -o output.sge -l h_vmem=${task.memory.toGiga()}G" }
}

profiles {
    archgen {
        params {
            igenomes_base              = "/mnt/archgen/public_data/igenomes"
            config_profile_description = 'MPI-EVA archgen profile, provided by nf-core/configs.'
            max_memory                 = 256.GB
            max_cpus                   = 32
            max_time                   = 365.d
        }

        process {
            resourceLimits = [
                memory: 256.GB,
                cpus: 32,
                time: 365.d
            ]
            queue          = { task.memory > 700.GB ? 'bigmem.q' : 'archgen.q' }
            clusterOptions = { "-S /bin/bash -V -j y -o output.sge -l h_vmem=${task.memory.toGiga()}G" }
        }

        singularity {
            cacheDir = "/mnt/archgen/tools/singularity/containers/"
        }
    }
    // Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option.
    debug {
        cleanup = false
    }
}