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lines changed Original file line number Diff line number Diff line change @@ -37,7 +37,7 @@ workflow PREPARE_GENOME {
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ch_fasta = GUNZIP_FASTA ( [ [id :" target_fasta" ], params. fasta ] ). gunzip
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ch_versions = ch_versions. mix(GUNZIP_FASTA . out. versions)
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} else {
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- ch_fasta = Channel . from( file(params. fasta) ). map { row -> [[id :" spikein_fasta " ], row] }
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+ ch_fasta = Channel . from( file(params. fasta) ). map { row -> [[id :" fasta " ], row] }
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}
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/*
@@ -116,7 +116,7 @@ workflow PREPARE_GENOME {
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/*
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* Index genome fasta file
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*/
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- ch_fasta_index = SAMTOOLS_FAIDX ( ch_fasta, [[id :" spikein_fasta " ], []] ). fai
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+ ch_fasta_index = SAMTOOLS_FAIDX ( ch_fasta, [[id :" fasta " ], []] ). fai
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ch_versions = ch_versions. mix(SAMTOOLS_FAIDX . out. versions)
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/*
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