From 2033fc0e1c1513e9c9e41e3e0be7f1a3189972d8 Mon Sep 17 00:00:00 2001
From: JoseEspinosa <kadomu@gmail.com>
Date: Mon, 21 Oct 2024 15:06:11 +0200
Subject: [PATCH] Remove previous ci_nextflow, now is in nf-core as ci.yml

---
 .github/workflows/ci_nextflow.yml | 60 -------------------------------
 1 file changed, 60 deletions(-)
 delete mode 100644 .github/workflows/ci_nextflow.yml

diff --git a/.github/workflows/ci_nextflow.yml b/.github/workflows/ci_nextflow.yml
deleted file mode 100644
index d5e3aef..0000000
--- a/.github/workflows/ci_nextflow.yml
+++ /dev/null
@@ -1,60 +0,0 @@
-name: pipeline CI
-# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
-on:
-  push:
-    branches:
-      - main
-  pull_request:
-  release:
-    types: [published]
-
-env:
-  NXF_ANSI_LOG: false
-
-concurrency:
-  group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"
-  cancel-in-progress: true
-
-jobs:
-  test:
-    name: Run pipeline with test data
-    # Only run on push if this is the nf-core dev branch (merged PRs)
-    if: "${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'mathysgrapotte/stimulus') }}"
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        NXF_VER:
-          - "23.04.0"
-          - "latest-everything"
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4
-
-      - name: Install Nextflow
-        uses: nf-core/setup-nextflow@v1
-        with:
-          version: "${{ matrix.NXF_VER }}"
-
-      - name: Disk space cleanup
-        uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
-
-      - name: Run pipeline with test data
-        # TODO: Get rid of local profile when the nf-core like configs are in
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test,docker
-
-  test_stub:
-    name: Stub run of the pipeline
-    if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'mathysgrapotte/stimulus') }}
-    runs-on: ubuntu-latest
-    steps:
-      - name: Check out pipeline code
-        uses: actions/checkout@v2
-
-      - name: Install Nextflow
-        run: |
-          wget -qO- get.nextflow.io | bash
-          sudo mv nextflow /usr/local/bin/
-      - name: Run pipeline with stub-run
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test_stub,docker --outdir results