diff --git a/modules/local/aspera_cli/tests/main.nf.test.snap b/modules/local/aspera_cli/tests/main.nf.test.snap index 462585e3..ff8acd4c 100644 --- a/modules/local/aspera_cli/tests/main.nf.test.snap +++ b/modules/local/aspera_cli/tests/main.nf.test.snap @@ -3,29 +3,73 @@ "content": [ { "0": [ - + [ + { + "id": "SRX9626017_SRR13191702", + "single_end": false, + "md5_1": "89c5be920021a035084d8aeb74f32df7", + "md5_2": "56271be38a80db78ef3bdfc5d9909b98" + }, + [ + "SRX9626017_SRR13191702_1.fastq.gz:md5,baaaea61cba4294ec696fdfea1610848", + "SRX9626017_SRR13191702_2.fastq.gz:md5,8e43ad99049fabb6526a4b846da01c32" + ] + ] ], "1": [ - + [ + { + "id": "SRX9626017_SRR13191702", + "single_end": false, + "md5_1": "89c5be920021a035084d8aeb74f32df7", + "md5_2": "56271be38a80db78ef3bdfc5d9909b98" + }, + [ + "SRX9626017_SRR13191702_1.fastq.gz.md5:md5,055a6916ec9ee478e453d50651f87997", + "SRX9626017_SRR13191702_2.fastq.gz.md5:md5,c30ac785f8d80ec563fabf604d8bf945" + ] + ] ], "2": [ - + "versions.yml:md5,a51a1dfc6308d71058ddc12c46101dd3" ], "fastq": [ - + [ + { + "id": "SRX9626017_SRR13191702", + "single_end": false, + "md5_1": "89c5be920021a035084d8aeb74f32df7", + "md5_2": "56271be38a80db78ef3bdfc5d9909b98" + }, + [ + "SRX9626017_SRR13191702_1.fastq.gz:md5,baaaea61cba4294ec696fdfea1610848", + "SRX9626017_SRR13191702_2.fastq.gz:md5,8e43ad99049fabb6526a4b846da01c32" + ] + ] ], "md5": [ - + [ + { + "id": "SRX9626017_SRR13191702", + "single_end": false, + "md5_1": "89c5be920021a035084d8aeb74f32df7", + "md5_2": "56271be38a80db78ef3bdfc5d9909b98" + }, + [ + "SRX9626017_SRR13191702_1.fastq.gz.md5:md5,055a6916ec9ee478e453d50651f87997", + "SRX9626017_SRR13191702_2.fastq.gz.md5:md5,c30ac785f8d80ec563fabf604d8bf945" + ] + ] ], "versions": [ - + "versions.yml:md5,a51a1dfc6308d71058ddc12c46101dd3" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:48:03.248398219" + "timestamp": "2024-09-17T09:16:31.501413" } } \ No newline at end of file diff --git a/modules/local/multiqc_mappings_config/tests/main.nf.test.snap b/modules/local/multiqc_mappings_config/tests/main.nf.test.snap index fcd07b02..9862693f 100644 --- a/modules/local/multiqc_mappings_config/tests/main.nf.test.snap +++ b/modules/local/multiqc_mappings_config/tests/main.nf.test.snap @@ -6,10 +6,10 @@ "multiqc_config.yml:md5,7f3cb10fff83ba9eb3e8fa6862d1290a" ], "1": [ - "versions.yml:md5,c75e3e07b124e83f49a44d9bc31bd8e8" + "versions.yml:md5,dd4c66f0551d15510b36bb2e2b2fdd73" ], "versions": [ - "versions.yml:md5,c75e3e07b124e83f49a44d9bc31bd8e8" + "versions.yml:md5,dd4c66f0551d15510b36bb2e2b2fdd73" ], "yml": [ "multiqc_config.yml:md5,7f3cb10fff83ba9eb3e8fa6862d1290a" @@ -17,9 +17,9 @@ } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:34:17.43270068" + "timestamp": "2024-09-17T09:16:46.557614" } } \ No newline at end of file diff --git a/modules/local/sra_fastq_ftp/tests/main.nf.test.snap b/modules/local/sra_fastq_ftp/tests/main.nf.test.snap index 681a20c8..0449978f 100644 --- a/modules/local/sra_fastq_ftp/tests/main.nf.test.snap +++ b/modules/local/sra_fastq_ftp/tests/main.nf.test.snap @@ -31,7 +31,7 @@ ] ], "2": [ - "versions.yml:md5,0642085ed317ac363ce5f3a3605d22df" + "versions.yml:md5,7bfc86ca1f3e3236dbb91eb85c1d7af0" ], "fastq": [ [ @@ -62,14 +62,14 @@ ] ], "versions": [ - "versions.yml:md5,0642085ed317ac363ce5f3a3605d22df" + "versions.yml:md5,7bfc86ca1f3e3236dbb91eb85c1d7af0" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:48:13.37244363" + "timestamp": "2024-09-17T09:16:57.715689" } } \ No newline at end of file diff --git a/modules/local/sra_ids_to_runinfo/tests/main.nf.test.snap b/modules/local/sra_ids_to_runinfo/tests/main.nf.test.snap index 939f1548..413f42a8 100644 --- a/modules/local/sra_ids_to_runinfo/tests/main.nf.test.snap +++ b/modules/local/sra_ids_to_runinfo/tests/main.nf.test.snap @@ -6,20 +6,20 @@ "SRR13191702.runinfo.tsv:md5,3a1be35781ca6e8a28d8fd4d2f3bbe85" ], "1": [ - "versions.yml:md5,452af3b6d74d1de88f851d78473df8d4" + "versions.yml:md5,1c14442e9b494b586eafe41e77300fae" ], "tsv": [ "SRR13191702.runinfo.tsv:md5,3a1be35781ca6e8a28d8fd4d2f3bbe85" ], "versions": [ - "versions.yml:md5,452af3b6d74d1de88f851d78473df8d4" + "versions.yml:md5,1c14442e9b494b586eafe41e77300fae" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:47:54.693964769" + "timestamp": "2024-09-17T09:17:11.040523" } } \ No newline at end of file diff --git a/modules/local/sra_runinfo_to_ftp/tests/main.nf.test.snap b/modules/local/sra_runinfo_to_ftp/tests/main.nf.test.snap index 82f63709..a4090ef3 100644 --- a/modules/local/sra_runinfo_to_ftp/tests/main.nf.test.snap +++ b/modules/local/sra_runinfo_to_ftp/tests/main.nf.test.snap @@ -6,20 +6,20 @@ "SRR13191702.runinfo_ftp.tsv:md5,94378c448c044b3e20e5c54e442ab62e" ], "1": [ - "versions.yml:md5,87be2d8760490c5b0329a8710644b4e3" + "versions.yml:md5,e95f8185f665127a73622a19d321bcca" ], "tsv": [ "SRR13191702.runinfo_ftp.tsv:md5,94378c448c044b3e20e5c54e442ab62e" ], "versions": [ - "versions.yml:md5,87be2d8760490c5b0329a8710644b4e3" + "versions.yml:md5,e95f8185f665127a73622a19d321bcca" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:48:35.453829086" + "timestamp": "2024-09-17T09:17:23.371547" } } \ No newline at end of file diff --git a/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap b/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap index 4b3309d4..158ac449 100644 --- a/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap +++ b/modules/nf-core/custom/sratoolsncbisettings/tests/main.nf.test.snap @@ -2,13 +2,13 @@ "Should run without failures": { "content": [ [ - "versions.yml:md5,bc8238c8fcfbd7d5d4d32614fcf0027a" + "versions.yml:md5,3d6ee88cce1ee517e198633f062589a8" ] ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T16:47:47.694358192" + "timestamp": "2024-09-17T09:17:35.745689" } } \ No newline at end of file diff --git a/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap b/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap index de7d0a5f..927eef7f 100644 --- a/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap +++ b/modules/nf-core/sratools/fasterqdump/tests/main.nf.test.snap @@ -3,46 +3,76 @@ "content": [ { "0": [ - + [ + { + "id": "test_single_end", + "single_end": true + }, + "test_single_end.fastq.gz:md5,674d78c1cc3c1308d6d39d6369a42887" + ] ], "1": [ - + "versions.yml:md5,6ff2d50b15c3f0eb9c72cd13a4a20295" ], "reads": [ - + [ + { + "id": "test_single_end", + "single_end": true + }, + "test_single_end.fastq.gz:md5,674d78c1cc3c1308d6d39d6369a42887" + ] ], "versions": [ - + "versions.yml:md5,6ff2d50b15c3f0eb9c72cd13a4a20295" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:50:04.981225374" + "timestamp": "2024-09-17T09:18:32.518988" }, "Paired-end": { "content": [ { "0": [ - + [ + { + "id": "test_paired_end", + "single_end": false + }, + [ + "test_paired_end_1.fastq.gz:md5,8573015c91d099b6e30789f8bab2f43c", + "test_paired_end_2.fastq.gz:md5,37e6f719a022dc3c9994c80fbc20c311" + ] + ] ], "1": [ - + "versions.yml:md5,6ff2d50b15c3f0eb9c72cd13a4a20295" ], "reads": [ - + [ + { + "id": "test_paired_end", + "single_end": false + }, + [ + "test_paired_end_1.fastq.gz:md5,8573015c91d099b6e30789f8bab2f43c", + "test_paired_end_2.fastq.gz:md5,37e6f719a022dc3c9994c80fbc20c311" + ] + ] ], "versions": [ - + "versions.yml:md5,6ff2d50b15c3f0eb9c72cd13a4a20295" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:50:20.779727834" + "timestamp": "2024-09-17T09:21:08.795572" } } \ No newline at end of file diff --git a/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap b/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap index bb220f43..fd12e79e 100644 --- a/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap +++ b/modules/nf-core/sratools/prefetch/tests/main.nf.test.snap @@ -14,7 +14,7 @@ ] ], "1": [ - "versions.yml:md5,a0ee57d5fe8e91604aa93b136db0d7b3" + "versions.yml:md5,83d1b23f5ff5b2ad1b96d17d7d7594ee" ], "sra": [ [ @@ -28,60 +28,92 @@ ] ], "versions": [ - "versions.yml:md5,a0ee57d5fe8e91604aa93b136db0d7b3" + "versions.yml:md5,83d1b23f5ff5b2ad1b96d17d7d7594ee" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T18:42:07.112577866" + "timestamp": "2024-09-17T09:24:17.373992" }, "sratools/prefetch with sralite": { "content": [ { "0": [ - + [ + { + "id": "test", + "single_end": false + }, + [ + "SRR1170046.sralite:md5,7acfce556ca0951aff49d780899c105b" + ] + ] ], "1": [ - + "versions.yml:md5,83d1b23f5ff5b2ad1b96d17d7d7594ee" ], "sra": [ - + [ + { + "id": "test", + "single_end": false + }, + [ + "SRR1170046.sralite:md5,7acfce556ca0951aff49d780899c105b" + ] + ] ], "versions": [ - + "versions.yml:md5,83d1b23f5ff5b2ad1b96d17d7d7594ee" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:49:40.146972356" + "timestamp": "2024-09-17T09:24:02.118978" }, "sratools/prefetch": { "content": [ { "0": [ - + [ + { + "id": "test", + "single_end": false + }, + [ + "DRR000774.sra:md5,7647dba20c89c0e3d7ad13842f060eb0" + ] + ] ], "1": [ - + "versions.yml:md5,83d1b23f5ff5b2ad1b96d17d7d7594ee" ], "sra": [ - + [ + { + "id": "test", + "single_end": false + }, + [ + "DRR000774.sra:md5,7647dba20c89c0e3d7ad13842f060eb0" + ] + ] ], "versions": [ - + "versions.yml:md5,83d1b23f5ff5b2ad1b96d17d7d7594ee" ] } ], "meta": { - "nf-test": "0.8.4", + "nf-test": "0.9.0", "nextflow": "24.04.4" }, - "timestamp": "2024-09-16T04:49:13.529179115" + "timestamp": "2024-09-17T09:21:54.739086" } } \ No newline at end of file