From a98ebbd5fa880857773d685a56c91e5a9f3afef0 Mon Sep 17 00:00:00 2001 From: Jasmin Frangenberg <73216762+jasmezz@users.noreply.github.com> Date: Tue, 27 Aug 2024 09:23:30 +0000 Subject: [PATCH 1/4] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index ba188b70..c4990416 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v2.0.0 - [2024-08] +## v2.0.0 - [2024-08-27] ### `Breaking change` From 0823b3fb7354e068fd8e793cece260de72d19222 Mon Sep 17 00:00:00 2001 From: Jasmin Frangenberg <73216762+jasmezz@users.noreply.github.com> Date: Sun, 1 Sep 2024 19:01:59 +0000 Subject: [PATCH 2/4] Update date in changelog --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index c4990416..e057c0bd 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v2.0.0 - [2024-08-27] +## v2.0.0 - [2024-09-01] ### `Breaking change` From e0764da2f1db947e132f233ddc584b364c018e11 Mon Sep 17 00:00:00 2001 From: jasmezz Date: Thu, 5 Sep 2024 10:31:25 +0200 Subject: [PATCH 3/4] Fix hamronization nf-test assertion --- tests/test_preannotated.nf.test | 2 +- tests/test_preannotated.nf.test.snap | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/tests/test_preannotated.nf.test b/tests/test_preannotated.nf.test index 2577b779..32a86ac4 100644 --- a/tests/test_preannotated.nf.test +++ b/tests/test_preannotated.nf.test @@ -121,7 +121,7 @@ nextflow_pipeline { { assert path("$outputDir/arg/fargene/sample_3/fargene_analysis.log").text.contains("fARGene is done.") }, // hAMRonization - { assert snapshot(path("$outputDir/reports/hamronization_summarize/hamronization_combined_report.tsv")).match("hamronization") }, + { assert snapshot(path("$outputDir/reports/hamronization_summarize/hamronization_combined_report.tsv").readLines().size()).match("hamronization") }, // argNorm { assert snapshot( diff --git a/tests/test_preannotated.nf.test.snap b/tests/test_preannotated.nf.test.snap index b1843ff4..e53c7215 100644 --- a/tests/test_preannotated.nf.test.snap +++ b/tests/test_preannotated.nf.test.snap @@ -106,13 +106,13 @@ }, "hamronization": { "content": [ - "hamronization_combined_report.tsv:md5,69a16cdf66a817c2ed1a725ecce02d5b" + 246 ], "meta": { - "nf-test": "0.8.4", - "nextflow": "24.04.4" + "nf-test": "0.9.0", + "nextflow": "24.04.3" }, - "timestamp": "2024-08-13T14:22:38.851885764" + "timestamp": "2024-09-05T10:17:06.711064611" }, "abricate": { "content": [ From 240bec435c132faf4bcd34184dee7bdf24582254 Mon Sep 17 00:00:00 2001 From: Jasmin Frangenberg <73216762+jasmezz@users.noreply.github.com> Date: Thu, 5 Sep 2024 08:31:57 +0000 Subject: [PATCH 4/4] Update CHANGELOG.md Co-authored-by: Maxime U Garcia --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index e057c0bd..67b1238a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## v2.0.0 - [2024-09-01] +## v2.0.0 - [2024-09-05] ### `Breaking change`