Merge branch 'master' into master

Author: marissaDubbelaar

CHANGELOG.md

@@ -6,7 +6,7 @@
 
 - Inclusion of assets/schema_input.json
 - Added the multiQC again to report the versions
-- MHCquant parameters are now directly assigned to the argument of the
+- MHCquant parameters are now directly assigned to the argument of the process
 
 ### `Fixed`
 

modules/local/generate_proteins_from_vcf.nf

@@ -4,9 +4,6 @@ include { initOptions; saveFiles } from './functions'
 params.options = [:]
 options        = initOptions(params.options)
 
-def VERSIONFRED2 = '2.0.6'
-def VERSIONMHCNUGGETS = '2.3.2'
-
 process GENERATE_PROTEINS_FROM_VCF {
     tag "$meta"
     label 'process_medium'