From 2db9232fcd92f9dd382c1fd142ca53504203c623 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Fri, 17 Nov 2023 17:30:35 +0000 Subject: [PATCH 1/3] fix input channels for star_align_igenomes --- modules/local/star_align_igenomes/main.nf | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/local/star_align_igenomes/main.nf b/modules/local/star_align_igenomes/main.nf index 3e5a169d8..b412a7e5c 100644 --- a/modules/local/star_align_igenomes/main.nf +++ b/modules/local/star_align_igenomes/main.nf @@ -9,8 +9,8 @@ process STAR_ALIGN_IGENOMES { input: tuple val(meta), path(reads) - path index - path gtf + tuple val(meta2), path(index) + tuple val(meta3), path(gtf) val star_ignore_sjdbgtf val seq_platform val seq_center From a4b044e2163013ddc7d958ec938a2416db490e47 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Fri, 17 Nov 2023 17:35:19 +0000 Subject: [PATCH 2/3] Version updates --- CHANGELOG.md | 6 ++++++ nextflow.config | 2 +- 2 files changed, 7 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 78429e553..9526c18d5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [[3.13.1](https://github.com/nf-core/rnaseq/releases/tag/3.13.0)] - 2023-11-17 + +### Enhancements and fixes + +- [[PR #1121](https://github.com/nf-core/rnaseq/pull/1121) - Changes for 3.13.1 patch release incl. igenomes star fix + ## [[3.13.0](https://github.com/nf-core/rnaseq/releases/tag/3.13.0)] - 2023-11-17 ### Credits diff --git a/nextflow.config b/nextflow.config index ab539161f..d42914210 100644 --- a/nextflow.config +++ b/nextflow.config @@ -317,7 +317,7 @@ manifest { description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '3.13.0' + version = '3.13.1' doi = 'https://doi.org/10.5281/zenodo.1400710' } From 1562e01197a8ef1f854db1204819f4fbcaca1cf8 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Fri, 17 Nov 2023 18:39:15 +0100 Subject: [PATCH 3/3] Update CHANGELOG.md --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 9526c18d5..4680c417a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,7 +3,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). -## [[3.13.1](https://github.com/nf-core/rnaseq/releases/tag/3.13.0)] - 2023-11-17 +## [[3.13.1](https://github.com/nf-core/rnaseq/releases/tag/3.13.1)] - 2023-11-17 ### Enhancements and fixes