From 0e18aecdf3e4f78665618bc1cafa9148e9b06e66 Mon Sep 17 00:00:00 2001 From: Nico Trummer Date: Wed, 12 Jun 2024 18:16:45 +0200 Subject: [PATCH] Add deprecation notice --- README.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/README.md b/README.md index f469759..7f22b70 100644 --- a/README.md +++ b/README.md @@ -16,6 +16,11 @@ ## Introduction +:::warning +This pipeline has been deprecated on June 13, 2024 because it did not meet the quality standards of nf-core. +Please use the [nf-core/scdownstream](https://nf-co.re/scdownstream) pipeline instead. +::: + **nf-core/scflow** is a bioinformatics pipeline for scalable, reproducible, best-practice analyses of single-cell/nuclei RNA-sequencing data. The pipeline is built using [Nextflow](https://www.nextflow.io), a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. Full case/control sc/sn-RNAseq analyses can be orchestrated with a single line of code on a local workstation, high-performance computing cluster (HPC), or on Cloud services including Google Cloud, Amazon Web Services, Microsoft Azure, and Kubernetes. It uses Docker/Singularity containers making installation trivial and results highly reproducible.