From d6f2da1ba2651bdceb78081cb212dad98f2b1c1b Mon Sep 17 00:00:00 2001 From: Gregor Sturm Date: Wed, 16 Aug 2023 13:54:04 +0200 Subject: [PATCH 1/2] Bump version to v2.4.0 for release --- assets/multiqc_config.yml | 4 ++-- nextflow.config | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index bd63c010..3b0c72ff 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -1,7 +1,7 @@ report_comment: > - This report has been generated by the nf-core/scrnaseq + This report has been generated by the nf-core/scrnaseq analysis pipeline. For information about how to interpret these results, please see the - documentation. + documentation. report_section_order: "nf-core-scrnaseq-methods-description": order: -1000 diff --git a/nextflow.config b/nextflow.config index a86e4add..39d968b2 100644 --- a/nextflow.config +++ b/nextflow.config @@ -262,7 +262,7 @@ manifest { description = """Pipeline for processing 10x Genomics single cell rnaseq data""" mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' - version = '2.4.0dev' + version = '2.4.0' doi = '10.5281/zenodo.3568187' } From b30255297d900a299f2ed2ec58441bf8a819cc35 Mon Sep 17 00:00:00 2001 From: Gregor Sturm Date: Wed, 16 Aug 2023 14:01:29 +0200 Subject: [PATCH 2/2] Update changelog --- CHANGELOG.md | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index a6383a5b..f1866715 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,17 +5,20 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unpublished Version / DEV] -- [#237](https://github.com/nf-core/scrnaseq/pull/237) Add `singularity.registry = 'quay.io'` and bump NF version to 23.04.0 +## v2.4.0 - 2023-08-16 Lime Platinum Crab + +- Fix typo causing empty version imformation for mtx_conversion subworkflow ([#254](https://github.com/nf-core/scrnaseq/pull/254)) +- Add `singularity.registry = 'quay.io'` and bump NF version to 23.04.0 ([#237](https://github.com/nf-core/scrnaseq/pull/237)) - Fixed issue with file collisions while using cellranger ([#232](https://github.com/nf-core/scrnaseq/pull/232)) - Fix issue where multiqc inputs tried to access objects that did not exist ([#239](https://github.com/nf-core/scrnaseq/pull/239)) -- Removed `public_aws_ecr` profile +- Removed `public_aws_ecr` profile ([#242](https://github.com/nf-core/scrnaseq/pull/242)) - Include cellranger in MultiQC report ([#244](https://github.com/nf-core/scrnaseq/pull/244)) - Nf-core template update to v2.9 ([#245](https://github.com/nf-core/scrnaseq/pull/245)) - Update cellranger and fastqc module ([#246](https://github.com/nf-core/scrnaseq/pull/246)). The [updated cellranger module](https://github.com/nf-core/modules/pull/3537) now automatically renames input FASTQ files to match the expected naming conventions. -## v2.3.2 - 2023-06-07 Patched Yellow Strontium Pinscher +## v2.3.2 - 2023-06-07 Sepia Samarium Salmon - Move containers for pipeline to quay.io ([#233](https://github.com/nf-core/scrnaseq/pull/233))