From 1ea078818aa56a4f04cd69cec45bd4fe4e651da1 Mon Sep 17 00:00:00 2001
From: "Maxime U. Garcia" <max.u.garcia@gmail.com>
Date: Fri, 20 Feb 2026 13:19:35 +0100
Subject: [PATCH] no modules binaries

---
 CHANGELOG.md                                              | 1 +
 .../resources/usr/bin => bin}/parse_illumina.py           | 0
 modules/local/rundirparser/tests/main.nf.test             | 1 -
 modules/local/rundirparser/tests/main.nf.test.snap        | 8 ++++----
 modules/local/rundirparser/tests/nextflow.config          | 1 -
 5 files changed, 5 insertions(+), 6 deletions(-)
 rename {modules/local/rundirparser/resources/usr/bin => bin}/parse_illumina.py (100%)
 delete mode 100644 modules/local/rundirparser/tests/nextflow.config

diff --git a/CHANGELOG.md b/CHANGELOG.md
index b511d1ea..2ac691ec 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -81,6 +81,7 @@ Initial release of nf-core/seqinspector, created with the [nf-core](https://nf-c
 - [#174](https://github.com/nf-core/seqinspector/pull/174) More strict syntax
 - [#174](https://github.com/nf-core/seqinspector/pull/174) No params included in workflows
 - [#175](https://github.com/nf-core/seqinspector/pull/175) Update all modules and migrate the whole pipeline to using topic versions
+- [#176](https://github.com/nf-core/seqinspector/pull/176) No modules binaries
 
 ### `Dependencies`
 
diff --git a/modules/local/rundirparser/resources/usr/bin/parse_illumina.py b/bin/parse_illumina.py
similarity index 100%
rename from modules/local/rundirparser/resources/usr/bin/parse_illumina.py
rename to bin/parse_illumina.py
diff --git a/modules/local/rundirparser/tests/main.nf.test b/modules/local/rundirparser/tests/main.nf.test
index 894ead33..9a0befcf 100644
--- a/modules/local/rundirparser/tests/main.nf.test
+++ b/modules/local/rundirparser/tests/main.nf.test
@@ -3,7 +3,6 @@ nextflow_process {
     name "Test Process RUNDIRPARSER"
     script "../main.nf"
     process "RUNDIRPARSER"
-    config "./nextflow.config"
 
     test("NovaSeq6000") {
 
diff --git a/modules/local/rundirparser/tests/main.nf.test.snap b/modules/local/rundirparser/tests/main.nf.test.snap
index 4031a773..59e9f50c 100644
--- a/modules/local/rundirparser/tests/main.nf.test.snap
+++ b/modules/local/rundirparser/tests/main.nf.test.snap
@@ -19,11 +19,11 @@
                 ]
             }
         ],
+        "timestamp": "2025-12-12T13:30:03.998435274",
         "meta": {
             "nf-test": "0.9.3",
             "nextflow": "25.10.2"
-        },
-        "timestamp": "2025-12-12T13:30:03.998435274"
+        }
     },
     "NovaSeq6000 - stub": {
         "content": [
@@ -45,10 +45,10 @@
                 ]
             }
         ],
+        "timestamp": "2025-12-12T13:30:11.388290534",
         "meta": {
             "nf-test": "0.9.3",
             "nextflow": "25.10.2"
-        },
-        "timestamp": "2025-12-12T13:30:11.388290534"
+        }
     }
 }
\ No newline at end of file
diff --git a/modules/local/rundirparser/tests/nextflow.config b/modules/local/rundirparser/tests/nextflow.config
deleted file mode 100644
index 651f0b86..00000000
--- a/modules/local/rundirparser/tests/nextflow.config
+++ /dev/null
@@ -1 +0,0 @@
-nextflow.enable.moduleBinaries = true