diff --git a/subworkflows/local/contaminant_filter/main.nf b/subworkflows/local/contaminant_filter/main.nf index 456ffc20..65b8c02e 100644 --- a/subworkflows/local/contaminant_filter/main.nf +++ b/subworkflows/local/contaminant_filter/main.nf @@ -66,7 +66,7 @@ workflow CONTAMINANT_FILTER { ch_versions = ch_versions.mix(INDEX_RRNA.out.versions) // Add meta.contaminant to input reads channel - ch_reads_for_mirna = ch_reads_for_mirna.map{meta, fastq -> return [[id:meta.id, contaminant: "rRNA", single_end:meta.single_end], fastq]} + ch_reads_for_mirna = ch_reads_for_mirna.map{meta, fastq -> return [[id: meta.id, contaminant: "rRNA", single_end: meta.single_end], fastq]} // Map which reads are rRNAs BOWTIE2_ALIGN_RRNA(ch_reads_for_mirna, INDEX_RRNA.out.index.first(), [[],[]], true, false)