Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

No Reference genome availabe in miRBase and MirGeneDB #487

Closed
sajjadasaf opened this issue Dec 10, 2024 · 2 comments
Closed

No Reference genome availabe in miRBase and MirGeneDB #487

sajjadasaf opened this issue Dec 10, 2024 · 2 comments
Labels
wontfix This will not be worked on

Comments

@sajjadasaf
Copy link

I want to run the smrnseq pipeline for a plant species whose genome is not available in miRBase or miRGeneDB. Can you guide me on whether it is possible to use this pipeline for such genomes? I am new to nf-core.
@atrigila
Copy link
Contributor

Currently it is not possible to use databases other than miRBase or miRGeneDB.

@apeltzer apeltzer added the wontfix This will not be worked on label Dec 16, 2024
@apeltzer
Copy link
Member

If you want to work on this, feel free to open a PR on the matter. We're currently not having capacity to work on this unfortunately :-(

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
wontfix This will not be worked on
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@apeltzer @atrigila @sajjadasaf