From fc7d58bf2224403c54d22a58707d01a0f6636e17 Mon Sep 17 00:00:00 2001 From: nschcolnicov Date: Tue, 15 Oct 2024 16:06:11 +0000 Subject: [PATCH 1/2] remove value from schema --- nextflow_schema.json | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/nextflow_schema.json b/nextflow_schema.json index dc5a3c3f..b9f43f08 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -499,11 +499,5 @@ { "$ref": "#/$defs/generic_options" } - ], - "properties": { - "igenomes_base": { - "type": "string", - "default": "s3://ngi-igenomes/igenomes/" - } - } + ] } From 45e3a40d70de8d844b866be7fd22a58bde2ceb5d Mon Sep 17 00:00:00 2001 From: nschcolnicov Date: Wed, 16 Oct 2024 15:02:52 +0000 Subject: [PATCH 2/2] added igrenomes_base --- nextflow_schema.json | 7 +++++++ 1 file changed, 7 insertions(+) diff --git a/nextflow_schema.json b/nextflow_schema.json index b9f43f08..02984622 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -183,6 +183,13 @@ "help_text": "Saving generated references means that you can use them for future pipeline runs, reducing processing times.", "fa_icon": "fas fa-save" }, + "igenomes_base": { + "type": "string", + "format": "directory-path", + "description": "Directory / URL base for iGenomes references.", + "default": "s3://ngi-igenomes/igenomes/", + "fa_icon": "fas fa-cloud-download-alt" + }, "igenomes_ignore": { "type": "boolean", "description": "Do not load the iGenomes reference config.",