.travis.yml

language: python
sudo: required

python:
  - "3.8"
  
#before_install:
#  - cd Machine-Learning-for-Structural-Bioinformatics/PSSpred/
#  - sudo apt-get install liblapack-dev
#  - sudo apt-get install libatlas-base-dev
#  - sudo apt-get install gfortran  
#  - pip3 install codecov
#  - pip3 install -U tox-travis
before_install:
  - sudo apt-get install gfortran libblas-dev liblapack-dev
  - pip3 install coverage
  - pip3 install numpy
install:
  - |
    ls
    python3 setup.py build
    python3 setup.py sdist
    python3 setup.py bdist
    python3 setup.py bdist_egg
    python3 setup.py install
# - coverage debug sys  
# - codecov
script:
  - ls
  - coverage run pymbd/vdw_param.py
  - bash <(curl -s https://codecov.io/bash)
  - cd /home/travis/build/nickcafferry/Machine-Learning-in-Molecular-Sciences/Machine-Learning-for-Structural-Bioinformatics/PSSpred/
  - mkdir nr
  - cd nr/
  - wget -O nr.tar.gz https://zhanglab.ccmb.med.umich.edu/cgi-bin/download_ftp.cgi?ID=nr.tar.gz
  - tar -zxvf nr.tar.gz
  - ls
  - cd ../
  - sudo apt-get install perl
  - cd PSSpred_v4/
  - ./PSSpred.pl seq.fasta
  - cat seq.dat
  - cat seq.dat.ss
  - pwd
notifications:
  email: false