build.yml

name: build

on:
    push

jobs:

    test-osx:
      runs-on: macos-latest

      steps:
      - uses: actions/checkout@v3
      - name: Set up Python 3.9
        uses: actions/setup-python@v3
        with:
          python-version: 3.9
      - name: Install dependencies with conda
        run: |
            sudo chown -R $UID $CONDA && source $CONDA/etc/profile.d/conda.sh && conda env update --file environment.yml
      - name: Run C and python tests
        run: |
            source $CONDA/etc/profile.d/conda.sh && conda activate gubbins_env && export PATH=$PATH:/lib/python3.9/site-packages/ && autoreconf -i &&  ./configure  --prefix=$CONDA_PREFIX --exec_prefix $CONDA_PREFIX CFLAGS="-O0 -I${CONDA_PREFIX}/include/" LDFLAGS="-L${CONDA_PREFIX}/lib/ -Wl,-rpath,${CONDA_PREFIX}/lib/" --host=x86_64-apple-darwin --build=x86_64-apple-darwin && make && sudo make install && make check

    test-linux:
      runs-on: ubuntu-latest

      steps:
      - uses: actions/checkout@v3
      - name: Set up Python 3.9
        uses: actions/setup-python@v3
        with:
          python-version: 3.9
      - name: Install dependencies with conda
        run: |
            $CONDA/bin/conda env update --file environment.yml && conda init
      - name: Install subunit from source
        run: |
            source $CONDA/etc/profile.d/conda.sh && conda activate gubbins_env && export LDFLAGS="-L${CONDA_PREFIX}/lib/ -Wl,-rpath,${CONDA_PREFIX}/lib/" && export CFLAGS="-I${CONDA_PREFIX}/include/" && export CPPUNIT_CFLAGS="-I${CONDA_PREFIX}/include/" && export CPPUNIT_LIBS="-L${CONDA_PREFIX}/lib/ -Wl,-rpath,${CONDA_PREFIX}/lib/" && conda install -c conda-forge testtools extras six testscenarios fixtures traceback2 python-mimeparse iso8601 && git clone https://github.com/testing-cabal/subunit.git && cd subunit && autoreconf -vi && CXXFLAGS="${CXXFLAGS} -I${CONDA_PREFIX}/include/" LDFLAGS="${LDFLAGS} -L${CONDA_PREFIX}/lib/ -lcppunit" ./configure --prefix=$CONDA_PREFIX && sudo make install && make check && cd ..
      - name: Run C and python tests
        run: |
            source $CONDA/etc/profile.d/conda.sh && conda activate gubbins_env && export LDFLAGS="-L${CONDA_PREFIX}/lib/ -Wl,-rpath,${CONDA_PREFIX}/lib/ --coverage" && export CFLAGS="-I${CONDA_PREFIX}/include/ --coverage" && export PATH=$PATH:/lib/python3.9/site-packages/ && export NUMBA_DISABLE_JIT=1 && autoreconf -i && ./configure --prefix=$CONDA_PREFIX --exec_prefix $CONDA_PREFIX -enable-code-coverage CFLAGS="$CFLAGS" LDFLAGS="$LDFLAGS" --host=x86_64-linux-gnu --build=x86_64-linux-gnu && make && sudo make install && export CODE_COVERAGE_OUTPUT_FILE="gubbins_coverage.info" && make check && make check-code-coverage
      - name: Upload python code coverage analysis
        uses: codecov/codecov-action@v2
        with:
            files: ./python/coverage.xml,gubbins_coverage.info