Add stats test

nickjcroucher · Apr 24, 2024 · eb630fa · eb630fa
1 parent a7da2e2
commit eb630fa
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Showing 2 changed files with 21 additions and 0 deletions.
diff --git a/tests/check_gubbins.c b/tests/check_gubbins.c
@@ -85,6 +85,7 @@ START_TEST (check_gubbins_multiple_recombinations)
 	ck_assert(number_of_recombinations_in_file("../tests/data/multiple_recombinations.tre.tab") == 4);
   ck_assert(compare_files("../tests/data/multiple_recombinations.tre","../tests/data/multiple_recombinations.expected.tre") == 1);
   ck_assert(compare_files("../tests/data/multiple_recombinations.tre.branch_snps.tab","../tests/data/multiple_recombinations.tre.branch_snps.expected.tab") == 1);
+  ck_assert(compare_files("../tests/data/multiple_recombinations.tre.stats","../tests/data/multiple_recombinations.tre.expected.stats") == 1);
 
 	remove("../tests/data/multiple_recombinations.tre");
 	remove("../tests/data/multiple_recombinations.tre.tab");

diff --git a/tests/data/multiple_recombinations.tre.expected.stats b/tests/data/multiple_recombinations.tre.expected.stats
@@ -0,0 +1,20 @@
+Node	Total SNPs	Number of SNPs Inside Recombinations	Number of SNPs Outside Recombinations	Number of Recombination Blocks	Bases in Recombinations	Cumulative Bases in Recombinations	r/m	rho/theta	Genome Length	Bases in Clonal Frame
+sequence_1	0	0	0	0	0	132	0.000000	0.000000	242	110
+sequence_2	1	0	1	0	0	166	0.000000	0.000000	242	76
+sequence_3	0	0	0	0	0	166	0.000000	0.000000	242	76
+sequence_4	1	0	1	0	0	166	0.000000	0.000000	242	76
+sequence_5	30	30	0	1	34	166	0.000000	0.000000	242	110
+sequence_6	0	0	0	0	0	132	0.000000	0.000000	242	110
+sequence_7	0	0	0	0	0	153	0.000000	0.000000	242	89
+sequence_8	0	0	0	0	0	153	0.000000	0.000000	242	89
+sequence_9	1	0	1	0	0	153	0.000000	0.000000	227	74
+sequence_10	0	0	0	0	0	0	0.000000	0.000000	227	227
+Node_1	0	0	0	0	0	153	0.000000	0.000000	242	89
+Node_2	22	21	1	1	21	153	21.000000	1.000000	242	110
+Node_3	1	0	1	0	0	132	0.000000	0.000000	242	110
+Node_4	0	0	0	0	0	132	0.000000	0.000000	242	110
+Node_5	0	0	0	0	0	166	0.000000	0.000000	242	76
+Node_6	32	30	2	1	34	166	15.000000	0.500000	242	110
+Node_7	1	0	1	0	0	132	0.000000	0.000000	242	110
+Node_8	180	132	48	1	132	132	2.750000	0.020833	242	242
+Node_9	0	0	0	0	0	0	0.000000	0.000000	242	242