#!/bin/bash

ARGS=$@

#export DISPLAY=:0
#GUROBI_LIB_PATH=/opt/gurobi811/linux64/lib

TF_JAVA_LIB_PATH=/home/micha/bin/fiji-linux64/Fiji.app/lib/linux64
MOMA_JAR_PATH=/home/micha/Documents/01_work/git/MoMA/target/

export GUROBI_LIB_PATH="/opt/gurobi811/linux64/lib"
export GUROBI_HOME="/opt/gurobi811/linux64"
export PATH="${PATH}:${GUROBI_HOME}/bin"
export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${GUROBI_HOME}/lib"
export GRB_LICENSE_FILE="/home/micha/Documents/LicenseFiles/gurobi.lic"


MOMA_JAR_FILENAME=$(ls $MOMA_JAR_PATH/*.jar | grep -P '^((?!original|tests|sources).)*.jar$' | grep -o '[^\/]*$')
#echo $MOMA_JAR_FILENAME

MOMA_TMP_WORK_DIR=$(mktemp -d -t moma.$(date +%Y%m%d-%H%M%S).XXXXX)
MOMA_TMP_WORK_DIR_TF="${MOMA_TMP_WORK_DIR}/tensorflow"
echo "MOMA_TMP_WORK_DIR: ${MOMA_TMP_WORK_DIR}"
mkdir "${MOMA_TMP_WORK_DIR_TF}"
#MOMA_TMP_WORK_DIR_JAVA="${MOMA_TMP_WORK_DIR}/.java"
#mkdir "${MOMA_TMP_WORK_DIR}"
#MOMA_TMP_WORK_DIR_USERPREFS="${MOMA_TMP_WORK_DIR_JAVA}/.userPrefs"
#mkdir "${MOMA_TMP_WORK_DIR_USERPREFS}"
#echo "MOMA_TMP_WORK_DIR: ${MOMA_TMP_WORK_DIR}"

#java -Xmx8g -Djava.library.path=$GUROBI_LIB_PATH:$TF_JAVA_LIB_PATH -jar $MOMA_JAR_PATH/$MOMA_JAR_FILENAME $ARGS
java -Xmx8g \
     -Djava.library.path="${GUROBI_LIB_PATH}" -Dimagej.tensorflow.models.dir="${MOMA_TMP_WORK_DIR_TF}" \
     -Djava.util.prefs.systemRoot="${MOMA_TMP_WORK_DIR}" \
     -Djava.util.prefs.userRoot="${MOMA_TMP_WORK_DIR}" \
     -jar $MOMA_JAR_PATH/$MOMA_JAR_FILENAME $ARGS