Bugfix release v1.2.1 (#126)

* Create ContinuousIntegration.yml (#124)

* Adding GCC pragma back in to make GCC compile in release mode.

* Fixes to issues #106 and #116.

* ContinuousIntegration make is now verbose (sorry).

* Fixing up some command-line flags.

* Removing signature command-line option.

This addresses issue #125.

* Put command line option in wrong place.

* Adding catch-adapter to target_link_libraries of select tests.

* Adding catch-adapter to njoy21 library

* Changing to g++-8 (#135)

* Update installation hyperlink in readme (#134)

* Updating ReleaseNotes.

Co-authored-by: Nick Touran <contact@partofthething.com>

Author: jlconlin

.github/workflows/ContinuousIntegration.yml

@@ -0,0 +1,42 @@
+# GitHub workflow to enable continuous integration
+name: Continuous Integration
+
+# This workflow is triggered on pushes and pull requests to the repository.
+on: 
+  push:
+    branches: '**'
+  pull_request: 
+    branches: 'master'
+
+jobs:
+  build:
+    runs-on: ${{matrix.os}}
+    strategy:
+      matrix:
+        os: [ ubuntu-18.04, macos-10.15 ]
+        cxx: [ g++-8, clang++ ]
+        vFortran: [ gfortran-8 ]
+        build_type: [ Debug, Release ]
+
+    steps:
+    - name: which CXX
+      run: |
+        which ${{matrix.cxx}} 
+        ${{matrix.cxx}} --version
+    - name: which gfortran
+      run: |
+        which ${{matrix.vFortran}}
+        ${{matrix.vFortran}} --version
+    - uses: actions/checkout@v2
+    - name: mkdir bin
+      run: mkdir bin 
+    - name: cmake
+      run: cmake -D CMAKE_Fortran_COMPILER=`which ${{matrix.vFortran}}` -D CMAKE_CXX_COMPILER=`which ${{matrix.cxx}}` -D CMAKE_BUILD_TYPE=${{matrix.build_type}} ..  
+      working-directory: ./bin
+    - name: make
+      run: make -j2 VERBOSE=1
+      working-directory: ./bin
+    - name: ctest
+      run: ctest -j2 -R njoy21*
+      working-directory: ./bin
+  

.gitignore

@@ -1,5 +1,5 @@
 subprojects
-bin
+bin*
 build
 __pycache__
 *.pyc

CMakeLists.txt

@@ -22,7 +22,7 @@ option( strict_compile
 
 # Compile flags
 set( common_flags "-Wall" "-Wextra" "-Wpedantic" )
-set( strict_flags "-Werror" )
+set( strict_flags "-Werror" "-Wno-unknown-warning-option" )
 set( release_flags "-O3" )
 set( debug_flags "-O0" "-g" )
 
@@ -52,9 +52,6 @@ endif()
 # Project targets
 ########################################################################
 
-configure_file( "${CMAKE_CURRENT_SOURCE_DIR}/src/njoy21/Signature.hpp.in"
-                "${CMAKE_CURRENT_BINARY_DIR}/src/njoy21/Signature.hpp" @ONLY )
-
 add_library( njoy21_library INTERFACE
     )
 target_include_directories( njoy21_library
@@ -68,6 +65,7 @@ target_link_libraries( njoy21_library
     INTERFACE njoy_c_bindings
     INTERFACE tclap-adapter
     INTERFACE utility
+    INTERFACE catch-adapter
     )
 
 #######################################################################

README.md

@@ -22,7 +22,8 @@ NJOY21 is primarily written in modern C++. It consists of many subprojects that
 Please refer to the [Release Notes](ReleaseNotes.md) to see what has changed from one version to the next.
 
 ## Installation
-Instructions for building and installing NJOY21---as well as any of the subprojects---are found on our [website](https://docs.github.io/install.html).
+Instructions for building and installing NJOY21---as well as any of the subprojects---are
+found on our [website](https://docs.njoy21.io/install.html).
 
 ## Version
 To see the version number for NJOY21, simply execute (after building):

ReleaseNotes.md

@@ -1,6 +1,9 @@
 # Release Notes—NJOY21
 Given here are some release notes for NJOY21. Each release is made through a formal [Pull Request](https://github.com/njoy/NJOY21/pulls) made on GitHub. There are links in this document that point to each of those Pull Requests, where you can see in great details the changes that were made. Often the Pull Requests are made in response to an [issue](https://github.com/njoy/NJOY21/issues). In such cases, links to those issues are also given.
 
+## [NJOY21 1.2.1](https://github.com/njoy/NJOY21/pull/126)
+This update removes the `--signature` command-line option as that was a feature of the previous build system. This also updates the GitHub Actions such that they now test all of the NJOY21 stuff, but not the integration tests.
+
 ## [NJOY21 1.2.0](https://github.com/njoy/NJOY21/pull/122)
 This update makes significant changes to the build system. Instead of using a [homegrown](https://github.com/njoy/metaconfigure) method for handling dependencies, we now use the [`FetchContent`](https://cmake.org/cmake/help/v3.16/module/FetchContent.html) capabilities in CMake. We now require CMake 3.16 to configure and build NJOY21. 
 

cmake/develop_dependencies.cmake

@@ -35,6 +35,12 @@ FetchContent_Declare( tclap-adapter
     GIT_SHALLOW     TRUE
     )
 
+FetchContent_Declare( catch-adapter
+    GIT_REPOSITORY  https://github.com/njoy/catch-adapter
+    GIT_TAG         origin/master
+    GIT_SHALLOW     TRUE
+    )
+
 FetchContent_Declare( utility
     GIT_REPOSITORY  https://github.com/njoy/utility
     GIT_TAG         origin/master

src/njoy21.hpp

@@ -18,7 +18,11 @@
 #include "Log.hpp"
 #include "utility.hpp"
 
+
+#pragma GCC diagnostic push
+#pragma GCC diagnostic ignored "-Wmaybe-uninitialized"
 #include "lipservice.hpp"
+#pragma GCC diagnostic pop
 
 #include "njoy_c.h"
 
@@ -37,7 +41,6 @@ struct CommandLine;
 #include "njoy21/interface.hpp"
 #include "njoy21/legacy.hpp"
 #include "njoy21/Version.hpp"
-#include "njoy21/Signature.hpp"
 
 }
 }

src/njoy21/CommandLine.hpp

@@ -16,7 +16,6 @@ struct njoy::njoy21::CommandLine {
   std::optional< std::string > errorPath;
   bool legacySwitch;
   bool verifyOnly;
-  bool signature;
 
   /* methods */
 #include "njoy21/CommandLine/src/ctor.hpp"

src/njoy21/CommandLine/src/ctor.hpp

@@ -18,11 +18,6 @@ CommandLine( int argc, char* argv[] ){
       "path to file where NJOY21 error ought to be directed. (defaults to standard error)",
       false, std::optional< std::string >(), " error path", cmd );
 
-  TCLAP::SwitchArg
-    signature( "", "signature", 
-      "Write signature to standard output", 
-      cmd );
-
   TCLAP::SwitchArg
     legacySwitch( "L", "legacy",
       "Call to Fortran routines even if C++ routines are available", cmd );
@@ -43,6 +38,5 @@ CommandLine( int argc, char* argv[] ){
   this->errorPath = errorPath.getValue();
   this->legacySwitch = legacySwitch.getValue();
   this->verifyOnly = verifyOnly.getValue();
-  this->signature = signature.getValue();
 }
 

src/njoy21/CommandLine/test/CMakeLists.txt

@@ -10,5 +10,5 @@ $<$<BOOL:${link_time_optimization}>:${${PREFIX}_link_time_optimization_flags}>
 $<$<BOOL:${nonportable_optimization}>:${${PREFIX}_nonportable_optimization_flags}>>
 
 ${CXX_appended_flags} ${njoy21_appended_flags} )
-target_link_libraries( njoy21.CommandLine.test PUBLIC njoy21_library ) 
+target_link_libraries( njoy21.CommandLine.test PUBLIC njoy21_library catch-adapter ) 
 add_test( NAME njoy21.CommandLine COMMAND njoy21.CommandLine.test )

src/njoy21/CommandLine/test/CommandLine.test.cpp

@@ -20,7 +20,6 @@ SCENARIO( "Parsing a command-line interface for options and flags" ){
     REQUIRE( not CL.outputPath );
     REQUIRE( not CL.legacySwitch );
     REQUIRE( not CL.verifyOnly );    
-    REQUIRE( not CL.signature );
   }
   GIVEN( "An instance of the Commandline with an input path" ){
     std::vector< std::string > arguments = { "njoy21", "--input", "/my/path" };

src/njoy21/Driver/Factory/src/setupManager.hpp

@@ -1,9 +1,5 @@
 static io::Manager setupManager( CommandLine& commandLine ){
   io::Manager::Builder builder;
-  if( commandLine.signature ){
-    std::cout << Signature::signature() << std::endl;
-    std::exit( 0 );
-  }
 
   if ( commandLine.inputPath ){
     builder.input( *(commandLine.inputPath) );

src/njoy21/Driver/test/CMakeLists.txt

@@ -10,7 +10,7 @@ $<$<BOOL:${link_time_optimization}>:${${PREFIX}_link_time_optimization_flags}>
 $<$<BOOL:${nonportable_optimization}>:${${PREFIX}_nonportable_optimization_flags}>>
 
 ${CXX_appended_flags} ${njoy21_appended_flags} )
-target_link_libraries( njoy21.Driver.test PUBLIC njoy21_library ) 
+target_link_libraries( njoy21.Driver.test PUBLIC njoy21_library catch-adapter ) 
 file( GLOB resources "resources/*" )
 foreach( resource ${resources})
     file( COPY "${resource}" DESTINATION "${CMAKE_CURRENT_BINARY_DIR}" )

src/njoy21/Signature.hpp.in

@@ -10,7 +10,8 @@ $<$<BOOL:${link_time_optimization}>:${${PREFIX}_link_time_optimization_flags}>
 $<$<BOOL:${nonportable_optimization}>:${${PREFIX}_nonportable_optimization_flags}>>
 
 ${CXX_appended_flags} ${njoy21_appended_flags} )
-target_link_libraries( njoy21.io.Manager.test PUBLIC njoy21_library ) 
+target_link_libraries( njoy21.io.Manager.test PUBLIC njoy21_library
+  catch-adapter ) 
 file( GLOB resources "resources/*" )
 foreach( resource ${resources})
     file( COPY "${resource}" DESTINATION "${CMAKE_CURRENT_BINARY_DIR}" )

src/njoy21/io/Manager/test/CMakeLists.txt

@@ -10,5 +10,6 @@ $<$<BOOL:${link_time_optimization}>:${${PREFIX}_link_time_optimization_flags}>
 $<$<BOOL:${nonportable_optimization}>:${${PREFIX}_nonportable_optimization_flags}>>
 
 ${CXX_appended_flags} ${njoy21_appended_flags} )
-target_link_libraries( njoy21.legacy.Sequence.test PUBLIC njoy21_library ) 
+target_link_libraries( njoy21.legacy.Sequence.test PUBLIC njoy21_library
+  catch-adapter ) 
 add_test( NAME njoy21.legacy.Sequence COMMAND njoy21.legacy.Sequence.test )