Onboarding Request: swfscDAS

[smwoodman]

Active Development

Yes

Move source code

No

Tool name

swfscDAS

Tool abbreviation

rDAS

Author(s)

Sam Woodman

Contributor(s)

No response

Tool logo

No response

NOAA Internal

Yes

Maintainer Name

Sam Woodman

Maintainer Email

sam.woodman@noaa.gov

Background Text

swfscDAS contains functions designed for processing and analyzing shipboard DAS data. This package was originally designed to handle DAS data collected using WinCruz, the ship-based line-transect data collection software developed by the Southwest Fisheries Science Center. However, the swfscDAS package can be used by anyone who has collected DAS data that meets the format requirements described in the 'DAS data format' section below, for instance to process decades of available NOAA Fisheries DAS survey data.

More generally, the package is intended to standardize and streamline basic DAS data processing. Functionality currently includes reading DAS data into a data frame, processing this data (extracting state and condition information for each DAS event), and summarizing sighting, effort, and comment information. Learn more in vignette("swfscDAS")

Citation

n/a

References

https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-305.PDF
https://github.com/swfsc/swfscDAS/blob/main/inst/DAS_Format.pdf

Associated Tools

https://github.com/SWFSC/cruzplot

User Organizations

https://ror.org/022d75229, https://ror.org/02apffz65

Online App Link

No response

Executable Link

No response

Website Link

No response

Documentation Link

https://swfsc.github.io/swfscDAS/

Source Code Link

https://github.com/SWFSC/swfscDAS

Software Badges

https://www.r-pkg.org/badges/version/swfscDAS

Installation instructions

In R, install from CRAN via install.packages("swfscDAS"). See more installation instructions and options at https://github.com/SWFSC/swfscDAS/blob/main/README.md#installation

Toolbox Drawers

• Ecosystems
• Fish and Fisheries
• Human Dimensions
• Protected Species
• General Modeling Tools
• Utility Tools

Keywords

• ADMB
• Age Structured Model
• Bayesian Modeling
• Bycatch
• C++
• Calculator
• Data Exploration
• Data Limited Method
• Data Visualization
• Decision Support Tool
• Developer Utilities
• Economics
• Ecosystem
• Ensemble Modeling
• Fish Biology
• Fisheries
• Gradient Solver
• Guided User Interface
• Individual Based Model
• Legacy Tool
• Length Structured Model
• Management Strategy Evaluation
• Marine Mammals
• Maximum Likelihood Estimation
• Model Builder
• Model Comparision
• Multispecies Model
• Natural Mortality Model
• NOAA Branding
• North Pacific
• Output Visualization
• Projection Modeling
• R Package
• Reference Points Model
• Risk Assessment Tool
• Salmon
• Sampling Decision Tool
• Shiny
• Simulation
• Size Spectra Model
• Size Structured Model
• Socioeconomics
• Spatial Model
• Species Distribution Model
• Standardized Reporting
• Stock Assessment Model
• Stock Assessment Projections
• Stock Assessment Tool
• Surplus Production Model
• Tag Data Model
• Teaching Tool
• Time Series
• TMB
• User Utilities
• Virtual Population Analysis
• Visualization
• Web App

Uses Github Releases

Yes

Static version number

No response

Comments

Open to suggestions throughout, and especially for keywords..

Code of Conduct

• I agree to follow the FIT's Code of Conduct