MIGRATION.md

Okay, I will provide a detailed report on the mappings from the old structure (derived from lib/repomix-output.xml and test/repomix-output.xml) to the new target layout you've provided.

The report will primarily focus on the lib directory files as requested, and then provide mappings for the test directory files, keeping in mind the new categorized test structure.

Lib File Mappings:

Here's a breakdown of how the files from the lib directory in the old structure map to the new layout:

Old Path (from lib/repomix-output.xml)	New Path (Target Layout)	Notes
elixir_scope/ai/analysis/intelligent_code_analyzer.ex	elixir_scope/intelligence/ai/analysis/intelligent_code_analyzer.ex	Moved to intelligence layer.
elixir_scope/ai/llm/providers/gemini.ex	elixir_scope/intelligence/ai/llm/providers/gemini.ex	Moved to intelligence layer.
elixir_scope/ai/llm/providers/mock.ex	elixir_scope/intelligence/ai/llm/providers/mock.ex	Moved to intelligence layer.
elixir_scope/ai/llm/providers/vertex.ex	elixir_scope/intelligence/ai/llm/providers/vertex.ex	Moved to intelligence layer.
elixir_scope/ai/llm/client.ex	elixir_scope/intelligence/ai/llm/client.ex	Moved to intelligence layer.
elixir_scope/ai/llm/config.ex	elixir_scope/intelligence/ai/llm/config.ex	Moved to intelligence layer.
elixir_scope/ai/llm/provider.ex	elixir_scope/intelligence/ai/llm/provider.ex	Moved to intelligence layer.
elixir_scope/ai/llm/response.ex	elixir_scope/intelligence/ai/llm/response.ex	Moved to intelligence layer.
elixir_scope/ai/predictive/execution_predictor.ex	elixir_scope/intelligence/ai/predictive/execution_predictor.ex	Moved to intelligence layer.
elixir_scope/ai/code_analyzer.ex	elixir_scope/intelligence/ai/code_analyzer.ex	Moved to intelligence layer.
elixir_scope/ai/complexity_analyzer.ex	elixir_scope/intelligence/ai/complexity_analyzer.ex	Moved to intelligence layer.
elixir_scope/ai/orchestrator.ex	elixir_scope/intelligence/ai/orchestrator.ex	Moved to intelligence layer.
elixir_scope/ai/pattern_recognizer.ex	elixir_scope/intelligence/ai/pattern_recognizer.ex	Moved to intelligence layer.
elixir_scope/ast/enhanced_transformer.ex	elixir_scope/ast/compiler/enhanced_transformer.ex	Moved under ast/compiler.
elixir_scope/ast/injector_helpers.ex	elixir_scope/ast/compiler/injector_helpers.ex	Moved under ast/compiler.
elixir_scope/ast/transformer.ex	elixir_scope/ast/compiler/transformer.ex	Moved under ast/compiler.
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors/assignment_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/expression_processors/assignment_processors.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors/basic_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/expression_processors/basic_processors.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors/control_flow_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/expression_processors/control_flow_processors.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors/data_structure_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/expression_processors/data_structure_processors.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors/function_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/expression_processors/function_processors.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/ast_processor_behavior.ex	elixir_scope/cpg/builder/cfg/cfg_generator/ast_processor_behavior.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/ast_processor.ex	elixir_scope/cpg/builder/cfg/cfg_generator/ast_processor.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/ast_utilities_behavior.ex	elixir_scope/cpg/builder/cfg/cfg_generator/ast_utilities_behavior.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/ast_utilities.ex	elixir_scope/cpg/builder/cfg/cfg_generator/ast_utilities.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/complexity_calculator.ex	elixir_scope/cpg/builder/cfg/cfg_generator/complexity_calculator.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/control_flow_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/control_flow_processors.ex	Refactored into CPG builder structure. (Assuming this is the primary one, not the one under expression_processors as per old input)
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors.ex	elixir_scope/cpg/builder/cfg/cfg_generator/expression_processors.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/integration_test.ex	elixir_scope/cpg/builder/cfg/cfg_generator/integration_test.ex	Test file moved from lib to lib (unusual, but following target). Should ideally be in test/.
elixir_scope/ast_repository/enhanced/cfg_generator/path_analyzer.ex	elixir_scope/cpg/builder/cfg/cfg_generator/path_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/state_manager_behaviour.ex	elixir_scope/cpg/builder/cfg/cfg_generator/state_manager_behaviour.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/state_manager.ex	elixir_scope/cpg/builder/cfg/cfg_generator/state_manager.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/state.ex	elixir_scope/cpg/builder/cfg/cfg_generator/state.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_generator/validators.ex	elixir_scope/cpg/builder/cfg/cfg_generator/validators.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/complexity_analyzer.ex	elixir_scope/cpg/builder/core/complexity_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/core.ex	elixir_scope/cpg/builder/core/core.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/graph_merger.ex	elixir_scope/cpg/builder/core/graph_merger.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/helpers.ex	elixir_scope/cpg/builder/core/helpers.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/pattern_detector.ex	elixir_scope/cpg/builder/core/pattern_detector.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/performance_analyzer.ex	elixir_scope/cpg/builder/core/performance_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/quality_analyzer.ex	elixir_scope/cpg/builder/core/quality_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/query_processor.ex	elixir_scope/cpg/builder/core/query_processor.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/security_analyzer.ex	elixir_scope/cpg/builder/core/security_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cpg_builder/validator.ex	elixir_scope/cpg/builder/core/validator.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/ast_analyzer.ex	elixir_scope/cpg/builder/dfg/dfg_generator/ast_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/dependency_analyzer.ex	elixir_scope/cpg/builder/dfg/dfg_generator/dependency_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/edge_creator.ex	elixir_scope/cpg/builder/dfg/dfg_generator/edge_creator.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/node_creator.ex	elixir_scope/cpg/builder/dfg/dfg_generator/node_creator.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/optimization_analyzer.ex	elixir_scope/cpg/builder/dfg/dfg_generator/optimization_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/pattern_analyzer.ex	elixir_scope/cpg/builder/dfg/dfg_generator/pattern_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/state_manager.ex	elixir_scope/cpg/builder/dfg/dfg_generator/state_manager.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/structure_builder.ex	elixir_scope/cpg/builder/dfg/dfg_generator/structure_builder.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/dfg_generator/variable_tracker.ex	elixir_scope/cpg/builder/dfg/dfg_generator/variable_tracker.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/ast_extractor.ex	elixir_scope/cpg/builder/project_analysis/ast_extractor.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/complexity_analyzer.ex	elixir_scope/cpg/builder/project_analysis/complexity_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/dependency_analyzer.ex	elixir_scope/cpg/builder/project_analysis/dependency_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/file_discovery.ex	elixir_scope/cpg/builder/project_analysis/file_discovery.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/file_parser.ex	elixir_scope/cpg/builder/project_analysis/file_parser.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/module_analyzer.ex	elixir_scope/cpg/builder/project_analysis/module_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/optimization_hints.ex	elixir_scope/cpg/builder/project_analysis/optimization_hints.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/performance_metrics.ex	elixir_scope/cpg/builder/project_analysis/performance_metrics.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/quality_analyzer.ex	elixir_scope/cpg/builder/project_analysis/quality_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/project_populator/security_analyzer.ex	elixir_scope/cpg/builder/project_analysis/security_analyzer.ex	Refactored into CPG builder structure.
elixir_scope/ast_repository/enhanced/cfg_data.ex	elixir_scope/cpg/data/cfg_data.ex	Moved to CPG data layer.
elixir_scope/ast_repository/enhanced/cfg_generator.ex	elixir_scope/cpg/builder/cfg.ex	Moved to CPG builder layer.
elixir_scope/ast_repository/enhanced/complexity_metrics.ex	elixir_scope/cpg/analysis/complexity_metrics.ex	Moved to CPG analysis layer.
elixir_scope/ast_repository/enhanced/cpg_builder.ex	elixir_scope/cpg/builder.ex	Top-level CPG builder.
elixir_scope/ast_repository/enhanced/cpg_data.ex	elixir_scope/cpg/data/cpg_data.ex	Moved to CPG data layer.
elixir_scope/ast_repository/enhanced/dfg_data.ex	elixir_scope/cpg/data/dfg_data.ex	Moved to CPG data layer.
elixir_scope/ast_repository/enhanced/dfg_generator_minimal.ex	elixir_scope/cpg/builder/dfg/minimal.ex	Moved to CPG builder layer.
elixir_scope/ast_repository/enhanced/dfg_generator.ex	elixir_scope/cpg/builder/dfg.ex	Moved to CPG builder layer.
elixir_scope/ast_repository/enhanced/enhanced_function_data.ex	elixir_scope/ast/enhanced/enhanced_function_data.ex	Consolidated under ast/enhanced/.
elixir_scope/ast_repository/enhanced/enhanced_module_data.ex	elixir_scope/ast/enhanced/enhanced_module_data.ex	Consolidated under ast/enhanced/.
elixir_scope/ast_repository/enhanced/file_watcher.ex	elixir_scope/cpg/file_watcher.ex	Moved to CPG layer.
elixir_scope/ast_repository/enhanced/project_populator.ex	elixir_scope/cpg/builder/project_populator.ex	Top-level project populator for CPG.
elixir_scope/ast_repository/enhanced/repository.ex	elixir_scope/ast/enhanced/repository.ex	Enhanced repository specific to AST.
elixir_scope/ast_repository/enhanced/shared_data_structures.ex	elixir_scope/cpg/data/shared_structures.ex	Moved to CPG data layer.
elixir_scope/ast_repository/enhanced/supporting_structures.ex	elixir_scope/cpg/data/supporting_structures.ex	Moved to CPG data layer.
elixir_scope/ast_repository/enhanced/synchronizer.ex	elixir_scope/cpg/synchronizer.ex	Moved to CPG layer.
elixir_scope/ast_repository/enhanced/variable_data.ex	elixir_scope/cpg/data/variable_data.ex	Moved to CPG data layer.
elixir_scope/ast_repository/memory_manager/cache_manager.ex	elixir_scope/ast/memory_manager/memory_manager/cache_manager.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/cleaner.ex	elixir_scope/ast/memory_manager/memory_manager/cleaner.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/compressor.ex	elixir_scope/ast/memory_manager/memory_manager/compressor.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/config.ex	elixir_scope/ast/memory_manager/memory_manager/config.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/monitor.ex	elixir_scope/ast/memory_manager/memory_manager/monitor.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/pressure_handler.ex	elixir_scope/ast/memory_manager/memory_manager/pressure_handler.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/supervisor.ex	elixir_scope/ast/memory_manager/memory_manager/supervisor.ex	Refactored into AST memory manager.
elixir_scope/ast_repository/memory_manager/test_runner.ex	elixir_scope/ast/memory_manager/memory_manager/test_runner.ex	Test runner (unusual for lib, might be for self-testing).
elixir_scope/ast_repository/module_data/ast_analyzer.ex	elixir_scope/ast/data/module_analysis/ast_analyzer.ex	Moved to ast/data/module_analysis.
elixir_scope/ast_repository/module_data/attribute_extractor.ex	elixir_scope/ast/data/module_analysis/attribute_extractor.ex	Moved to ast/data/module_analysis.
elixir_scope/ast_repository/module_data/complexity_calculator.ex	elixir_scope/ast/data/module_analysis/complexity_calculator.ex	Moved to ast/data/module_analysis.
elixir_scope/ast_repository/module_data/dependency_extractor.ex	elixir_scope/ast/data/module_analysis/dependency_extractor.ex	Moved to ast/data/module_analysis.
elixir_scope/ast_repository/module_data/pattern_detector.ex	elixir_scope/ast/data/module_analysis/pattern_detector.ex	Moved to ast/data/module_analysis.
elixir_scope/ast_repository/pattern_matcher/analyzers.ex	elixir_scope/ast/pattern_matcher/analyzers.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/cache.ex	elixir_scope/ast/pattern_matcher/cache.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/config.ex	elixir_scope/ast/pattern_matcher/config.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/core.ex	elixir_scope/ast/pattern_matcher/core.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/pattern_library.ex	elixir_scope/ast/pattern_matcher/pattern_library.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/pattern_rules.ex	elixir_scope/ast/pattern_matcher/pattern_rules.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/stats.ex	elixir_scope/ast/pattern_matcher/stats.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/types.ex	elixir_scope/ast/pattern_matcher/types.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/pattern_matcher/validators.ex	elixir_scope/ast/pattern_matcher/validators.ex	Refactored into ast/pattern_matcher.
elixir_scope/ast_repository/performance_optimizer/batch_processor.ex	elixir_scope/ast/performance_optimizer/performance_optimizer/batch_processor.ex	Refactored into ast/performance_optimizer.
elixir_scope/ast_repository/performance_optimizer/cache_manager.ex	elixir_scope/ast/performance_optimizer/performance_optimizer/cache_manager.ex	Refactored into ast/performance_optimizer.
elixir_scope/ast_repository/performance_optimizer/lazy_loader.ex	elixir_scope/ast/performance_optimizer/performance_optimizer/lazy_loader.ex	Refactored into ast/performance_optimizer.
elixir_scope/ast_repository/performance_optimizer/optimization_scheduler.ex	elixir_scope/ast/performance_optimizer/performance_optimizer/optimization_scheduler.ex	Refactored into ast/performance_optimizer.
elixir_scope/ast_repository/performance_optimizer/statistics_collector.ex	elixir_scope/ast/performance_optimizer/performance_optimizer/statistics_collector.ex	Refactored into ast/performance_optimizer.
elixir_scope/ast_repository/query_builder/cache.ex	elixir_scope/ast/query_builder/query_builder/cache.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/query_builder/executor.ex	elixir_scope/ast/query_builder/query_builder/executor.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/query_builder/normalizer.ex	elixir_scope/ast/query_builder/query_builder/normalizer.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/query_builder/optimizer.ex	elixir_scope/ast/query_builder/query_builder/optimizer.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/query_builder/supervisor.ex	elixir_scope/ast/query_builder/query_builder/supervisor.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/query_builder/types.ex	elixir_scope/ast/query_builder/query_builder/types.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/query_builder/validator.ex	elixir_scope/ast/query_builder/query_builder/validator.ex	Refactored into ast/query_builder.
elixir_scope/ast_repository/runtime_correlator/breakpoint_manager.ex	elixir_scope/capture/correlation/runtime/breakpoint_manager.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/cache_manager.ex	elixir_scope/capture/correlation/runtime/cache_manager.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/config.ex	elixir_scope/capture/correlation/runtime/config.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/context_builder.ex	elixir_scope/capture/correlation/runtime/context_builder.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/event_correlator.ex	elixir_scope/capture/correlation/runtime/event_correlator.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/trace_builder.ex	elixir_scope/capture/correlation/runtime/trace_builder.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/types.ex	elixir_scope/capture/correlation/runtime/types.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/runtime_correlator/utils.ex	elixir_scope/capture/correlation/runtime/utils.ex	Moved to capture/correlation/runtime.
elixir_scope/ast_repository/enhanced_function_data.ex	elixir_scope/ast/data/enhanced_function_data.ex	Moved to ast/data/.
elixir_scope/ast_repository/enhanced_module_data.ex	elixir_scope/ast/data/enhanced_module_data.ex	Moved to ast/data/.
elixir_scope/ast_repository/enhanced_repository.ex	elixir_scope/ast/repository/enhanced.ex	repository/enhanced.ex as the enhanced version.
elixir_scope/ast_repository/function_data.ex	elixir_scope/ast/data/function_data.ex	Moved to ast/data/.
elixir_scope/ast_repository/instrumentation_mapper.ex	elixir_scope/ast/data/instrumentation_mapper.ex	Moved to ast/data/.
elixir_scope/ast_repository/memory_manager.ex	elixir_scope/ast/legacy/memory_manager.ex	Marked as legacy.
elixir_scope/ast_repository/module_data.ex	elixir_scope/ast/data/module_data.ex	Moved to ast/data/.
elixir_scope/ast_repository/parser.ex	elixir_scope/ast/parser.ex	Top-level parser in ast/.
elixir_scope/ast_repository/pattern_matcher.ex	elixir_scope/ast/legacy/pattern_matcher.ex	Marked as legacy.
elixir_scope/ast_repository/performance_optimizer.ex	elixir_scope/ast/legacy/performance_optimizer.ex	Marked as legacy.
elixir_scope/ast_repository/query_builder.ex	elixir_scope/ast/legacy/query_builder.ex	Marked as legacy.
elixir_scope/ast_repository/repository.ex	elixir_scope/ast/repository.ex	Top-level repository interface/core.
elixir_scope/ast_repository/runtime_correlator.ex	elixir_scope/capture/correlation.ex	Top-level runtime correlator for capture.
elixir_scope/capture/enhanced_instrumentation/ast_correlator.ex	elixir_scope/debugger/enhanced/instrumentation/ast_correlator.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/enhanced_instrumentation/breakpoint_manager.ex	elixir_scope/debugger/enhanced/instrumentation/breakpoint_manager.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/enhanced_instrumentation/debugger_interface.ex	elixir_scope/debugger/enhanced/instrumentation/debugger_interface.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/enhanced_instrumentation/event_handler.ex	elixir_scope/debugger/enhanced/instrumentation/event_handler.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/enhanced_instrumentation/storage.ex	elixir_scope/debugger/enhanced/instrumentation/storage.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/enhanced_instrumentation/utils.ex	elixir_scope/debugger/enhanced/instrumentation/utils.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/enhanced_instrumentation/watchpoint_manager.ex	elixir_scope/debugger/enhanced/instrumentation/watchpoint_manager.ex	Moved to debugger/enhanced/instrumentation/.
elixir_scope/capture/ingestor/channel.ex	elixir_scope/capture/runtime/ingestor/channel.ex	Moved into capture/runtime/ingestor/.
elixir_scope/capture/ingestor/distributed.ex	elixir_scope/capture/runtime/ingestor/distributed.ex	Moved into capture/runtime/ingestor/.
elixir_scope/capture/ingestor/ecto.ex	elixir_scope/capture/runtime/ingestor/ecto.ex	Moved into capture/runtime/ingestor/.
elixir_scope/capture/ingestor/gen_server.ex	elixir_scope/capture/runtime/ingestor/gen_server.ex	Moved into capture/runtime/ingestor/.
elixir_scope/capture/ingestor/live_view.ex	elixir_scope/capture/runtime/ingestor/live_view.ex	Moved into capture/runtime/ingestor/.
elixir_scope/capture/ingestor/phoenix.ex	elixir_scope/capture/runtime/ingestor/phoenix.ex	Moved into capture/runtime/ingestor/.
elixir_scope/capture/instrumentation_runtime/ast_reporting.ex	elixir_scope/capture/runtime/instrumentation_runtime/ast_reporting.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/instrumentation_runtime/context.ex	elixir_scope/capture/runtime/instrumentation_runtime/context.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/instrumentation_runtime/core_reporting.ex	elixir_scope/capture/runtime/instrumentation_runtime/core_reporting.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/instrumentation_runtime/ecto_reporting.ex	elixir_scope/capture/runtime/instrumentation_runtime/ecto_reporting.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/instrumentation_runtime/gen_server_reporting.ex	elixir_scope/capture/runtime/instrumentation_runtime/gen_server_reporting.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/instrumentation_runtime/performance.ex	elixir_scope/capture/runtime/instrumentation_runtime/performance.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/instrumentation_runtime/phoenix_reporting.ex	elixir_scope/capture/runtime/instrumentation_runtime/phoenix_reporting.ex	Moved into capture/runtime/instrumentation_runtime/.
elixir_scope/capture/temporal_bridge_enhancement/ast_context_builder.ex	elixir_scope/capture/runtime/temporal_bridge_enhancement/ast_context_builder.ex	Moved into capture/runtime/temporal_bridge_enhancement/.
elixir_scope/capture/temporal_bridge_enhancement/cache_manager.ex	elixir_scope/capture/runtime/temporal_bridge_enhancement/cache_manager.ex	Moved into capture/runtime/temporal_bridge_enhancement/.
elixir_scope/capture/temporal_bridge_enhancement/event_processor.ex	elixir_scope/capture/runtime/temporal_bridge_enhancement/event_processor.ex	Moved into capture/runtime/temporal_bridge_enhancement/.
elixir_scope/capture/temporal_bridge_enhancement/state_manager.ex	elixir_scope/capture/runtime/temporal_bridge_enhancement/state_manager.ex	Moved into capture/runtime/temporal_bridge_enhancement/.
elixir_scope/capture/temporal_bridge_enhancement/trace_builder.ex	elixir_scope/capture/runtime/temporal_bridge_enhancement/trace_builder.ex	Moved into capture/runtime/temporal_bridge_enhancement/.
elixir_scope/capture/temporal_bridge_enhancement/types.ex	elixir_scope/capture/runtime/temporal_bridge_enhancement/types.ex	Moved into capture/runtime/temporal_bridge_enhancement/.
elixir_scope/capture/async_writer_pool.ex	elixir_scope/capture/runtime/async_writer_pool.ex	Moved to capture/runtime/.
elixir_scope/capture/async_writer.ex	elixir_scope/capture/runtime/async_writer.ex	Moved to capture/runtime/.
elixir_scope/capture/enhanced_instrumentation.ex	elixir_scope/capture/enhanced/instrumentation.ex	Top-level for enhanced instrumentation.
elixir_scope/capture/event_correlator.ex	elixir_scope/capture/runtime/event_correlator.ex	Moved to capture/runtime/.
elixir_scope/capture/ingestor.ex	elixir_scope/capture/runtime/ingestor.ex	Moved to capture/runtime/.
elixir_scope/capture/instrumentation_runtime.ex	elixir_scope/capture/runtime/instrumentation_runtime.ex	Moved to capture/runtime/.
elixir_scope/capture/pipeline_manager.ex	elixir_scope/capture/runtime/pipeline_manager.ex	Moved to capture/runtime/.
elixir_scope/capture/ring_buffer.ex	elixir_scope/capture/runtime/ring_buffer.ex	Moved to capture/runtime/.
elixir_scope/capture/temporal_bridge_enhancement.ex	elixir_scope/capture/enhanced/temporal.ex	Top-level for enhanced temporal bridge.
elixir_scope/capture/temporal_bridge.ex	elixir_scope/capture/runtime/temporal_bridge.ex	Moved to capture/runtime/.
elixir_scope/capture/temporal_storage.ex	elixir_scope/capture/runtime/temporal_storage.ex	Moved to capture/runtime/.
elixir_scope/compile_time/orchestrator.ex	elixir_scope/ast/compile_time/orchestrator.ex	Moved to ast/compile_time/.
elixir_scope/compiler/mix_task.ex	elixir_scope/ast/compiler/mix_task.ex	Moved to ast/compiler/.
elixir_scope/core/ai_manager.ex	elixir_scope/foundation/core/ai_manager.ex	Moved to foundation/core/.
elixir_scope/core/event_manager.ex	elixir_scope/foundation/core/event_manager.ex	Moved to foundation/core/.
elixir_scope/core/message_tracker.ex	elixir_scope/foundation/core/message_tracker.ex	Moved to foundation/core/.
elixir_scope/core/state_manager.ex	elixir_scope/foundation/core/state_manager.ex	Moved to foundation/core/.
elixir_scope/distributed/event_synchronizer.ex	elixir_scope/foundation/distributed/event_synchronizer.ex	Moved to foundation/distributed/.
elixir_scope/distributed/global_clock.ex	elixir_scope/foundation/distributed/global_clock.ex	Moved to foundation/distributed/.
elixir_scope/distributed/node_coordinator.ex	elixir_scope/foundation/distributed/node_coordinator.ex	Moved to foundation/distributed/.
elixir_scope/phoenix/integration.ex	elixir_scope/integration/phoenix/integration.ex	Moved to integration/phoenix/.
elixir_scope/query/engine.ex	elixir_scope/query/legacy/engine.ex	Marked as legacy under query/.
elixir_scope/storage/data_access.ex	elixir_scope/capture/storage/storage/data_access.ex	Moved to capture/storage/storage/.
elixir_scope/storage/event_store.ex	elixir_scope/capture/storage/storage/event_store.ex	Moved to capture/storage/storage/.
elixir_scope/application.ex	elixir_scope/foundation/application.ex	Moved to foundation/.
elixir_scope/config.ex	elixir_scope/foundation/config.ex	Moved to foundation/.
elixir_scope/event_store.ex	elixir_scope/foundation/event_store.ex	Wrapper remains in foundation/.
elixir_scope/events.ex	elixir_scope/foundation/events.ex	Moved to foundation/.
elixir_scope/utils.ex	elixir_scope/foundation/utils.ex	Moved to foundation/.
elixir_scope.ex	elixir_scope/elixir_scope.ex	Main module.

Test File Mappings:

Mapping test files is more complex due to the introduction of new test categories (contract, end_to_end, functional, performance, property, scenarios, unit). The general principle is to mirror the lib structure within the most appropriate category, usually unit or integration.

Old Path (from test/repomix-output.xml)	New Path (Target Layout - Best Guess)	Notes
elixir_scope/ai/analysis/intelligent_code_analyzer_test.exs	test/unit/intelligence/ai/analysis/intelligent_code_analyzer_test.exs	Unit test for the AI analyzer.
elixir_scope/ai/llm/providers/gemini_live_test.exs	test/integration/external_apis/llm_provider_contracts_test.exs (or a new test/contract/)	Live API tests are contracts.
elixir_scope/ai/llm/providers/mock_test.exs	test/unit/intelligence/ai/llm/providers/mock_test.exs	Unit test for mock provider.
elixir_scope/ai/llm/providers/vertex_live_test.exs	test/integration/external_apis/llm_provider_contracts_test.exs (or a new test/contract/)	Live API tests are contracts.
elixir_scope/ai/llm/client_test.exs	test/unit/intelligence/ai/llm/client_test.exs	Unit test for LLM client.
elixir_scope/ai/llm/config_test.exs	test/unit/intelligence/ai/llm/config_test.exs	Unit test for LLM config.
elixir_scope/ai/llm/provider_compliance_test.exs	test/contract/behaviour_compliance/behaviour_implementations_test.exs (or llm_provider_contracts_test.exs)	Compliance test.
elixir_scope/ai/llm/response_test.exs	test/unit/intelligence/ai/llm/response_test.exs	Unit test for LLM response.
elixir_scope/ai/predictive/execution_predictor_test.exs	test/unit/intelligence/ai/predictive/execution_predictor_test.exs	Unit test.
elixir_scope/ai/code_analyzer_test.exs	test/unit/intelligence/ai/code_analyzer_test.exs	Unit test.
elixir_scope/ast/enhanced_transformer_test.exs	test/unit/ast/compiler/enhanced_transformer_test.exs	Unit test for AST compiler component.
elixir_scope/ast/transformer_test.exs	test/unit/ast/compiler/transformer_test.exs	Unit test for AST compiler component.
elixir_scope/ast_repository/enhanced/cfg_generator/expression_processors_test.exs	test/unit/cpg/builder/cfg/cfg_generator/expression_processors_test.exs	Unit test for CPG component.
elixir_scope/ast_repository/enhanced/cfg_generator/integration_test.exs	test/integration/cpg_analysis/cfg_generator_integration_test.exs (or test/functional/cpg_construction/)	Integration test for CFG generator.
elixir_scope/ast_repository/pattern_matcher/config_test.exs	test/unit/ast/pattern_matcher/config_test.exs	Unit test for AST pattern matcher.
elixir_scope/ast_repository/pattern_matcher/types_test.exs	test/unit/ast/pattern_matcher/types_test.exs	Unit test for AST pattern matcher.
elixir_scope/ast_repository/pattern_matcher/validators_test.exs	test/unit/ast/pattern_matcher/validators_test.exs	Unit test for AST pattern matcher.
elixir_scope/ast_repository/cfg_generator_enhanced_test.exs	test/functional/cpg_construction/cfg_generator_enhanced_test.exs (or unit if focused on new features)	Test for enhanced CFG features.
elixir_scope/ast_repository/cfg_generator_test.exs	test/unit/cpg/builder/cfg_generator_test.exs (assuming it tests the core of cfg.ex)	Unit test for CFG generator.
elixir_scope/ast_repository/cpg_builder_enhanced_test.exs	test/functional/cpg_construction/cpg_builder_enhanced_test.exs	Test for enhanced CPG features.
elixir_scope/ast_repository/cpg_builder_test.exs	test/unit/cpg/builder_test.exs	Unit test for CPG builder.
elixir_scope/ast_repository/dfg_generator_enhanced_test.exs	test/functional/cpg_construction/dfg_generator_enhanced_test.exs	Test for enhanced DFG features.
elixir_scope/ast_repository/dfg_generator_test.exs	test/unit/cpg/builder/dfg_generator_test.exs	Unit test for DFG generator.
elixir_scope/ast_repository/enhanced_repository_integration_test.exs	test/integration/ast_cpg/enhanced_repository_integration_test.exs	Integration test for enhanced repo.
elixir_scope/ast_repository/enhanced_repository_test.exs	test/unit/ast/enhanced/repository_test.exs	Unit test for enhanced repo.
elixir_scope/ast_repository/file_watcher_test.exs	test/unit/cpg/file_watcher_test.exs	Unit test for CPG file watcher.
elixir_scope/ast_repository/instrumentation_mapper_test.exs	test/unit/ast/data/instrumentation_mapper_test.exs	Unit test.
elixir_scope/ast_repository/memory_manager_test.exs	test/unit/ast/legacy/memory_manager_test.exs (or if it tests the new one: test/unit/ast/memory_manager/)	Likely tests the legacy component.
elixir_scope/ast_repository/module_data_integration_test.exs	test/integration/ast_cpg/module_data_integration_test.exs	Integration test.
elixir_scope/ast_repository/parser_enhanced_test.exs	test/unit/ast/parser_enhanced_test.exs	Unit test for enhanced parser features.
elixir_scope/ast_repository/parser_test.exs	test/unit/ast/parser_test.exs	Unit test for parser.
elixir_scope/ast_repository/pattern_matcher_old_test.exs	test/orig/elixir_scope/ast_repository/pattern_matcher_old_test.exs	Moved to orig as it's an old test.
elixir_scope/ast_repository/pattern_matcher_test.exs	test/unit/ast/pattern_matcher/pattern_matcher_test.exs	Unit test for AST pattern matcher.
elixir_scope/ast_repository/performance_test.exs	test/performance/benchmarks/ast_repository_performance_test.exs	Moved to performance benchmarks.
elixir_scope/ast_repository/project_populator_test.exs	test/unit/cpg/builder/project_populator_test.exs	Unit test for CPG component.
elixir_scope/ast_repository/query_builder_test.exs	test/unit/ast/legacy/query_builder_test.exs (or test/unit/ast/query_builder/)	Tests the legacy query builder.
elixir_scope/ast_repository/repository_test.exs	test/unit/ast/repository_test.exs	Unit test for AST repository.
elixir_scope/ast_repository/runtime_correlator_test.exs	test/unit/capture/correlation_test.exs (or test/unit/capture/correlation/runtime_correlator_test.exs)	Unit test for runtime correlation.
elixir_scope/ast_repository/synchronizer_test.exs	test/unit/cpg/synchronizer_test.exs	Unit test for CPG synchronizer.
elixir_scope/capture/async_writer_pool_test.exs	test/unit/capture/runtime/async_writer_pool_test.exs	Unit test.
elixir_scope/capture/async_writer_test.exs	test/unit/capture/runtime/async_writer_test.exs	Unit test.
elixir_scope/capture/event_correlator_test.exs	test/unit/capture/runtime/event_correlator_test.exs	Unit test.
elixir_scope/capture/ingestor_test.exs	test/unit/capture/runtime/ingestor_test.exs	Unit test.
elixir_scope/capture/instrumentation_runtime_enhanced_test.exs	test/unit/debugger/enhanced/instrumentation_runtime_enhanced_test.exs	Unit test for enhanced instrumentation.
elixir_scope/capture/instrumentation_runtime_integration_test.exs	test/integration/capture_debugger/instrumentation_runtime_integration_test.exs	Integration test.
elixir_scope/capture/instrumentation_runtime_temporal_integration_test.exs	test/integration/capture_debugger/instrumentation_runtime_temporal_integration_test.exs	Integration test.
elixir_scope/capture/pipeline_manager_test.exs	test/unit/capture/runtime/pipeline_manager_test.exs	Unit test.
elixir_scope/capture/ring_buffer_test.exs	test/unit/capture/runtime/ring_buffer_test.exs	Unit test.
elixir_scope/capture/temporal_bridge_test.exs	test/unit/capture/runtime/temporal_bridge_test.exs	Unit test.
elixir_scope/capture/temporal_storage_test.exs	test/unit/capture/runtime/temporal_storage_test.exs	Unit test.
elixir_scope/compiler/mix_task_test.exs	test/unit/ast/compiler/mix_task_test.exs	Unit test for compiler task.
elixir_scope/config_test.exs	test/unit/foundation/config_test.exs	Unit test for foundation config.
elixir_scope/distributed/multi_node_test.exs	test/end_to_end/distributed_system_analysis/multi_node_test.exs	End-to-end test for distributed features.
elixir_scope/events_test.exs	test/unit/foundation/events_test.exs	Unit test for foundation events.
elixir_scope/integration/api_completion_test.exs	test/integration/layer_dependencies/api_completion_test.exs (or test/functional/)	Integration test for API.
elixir_scope/integration/ast_runtime_integration_test.exs	test/integration/capture_debugger/ast_runtime_integration_test.exs	Integration test.
elixir_scope/integration/end_to_end_hybrid_test.exs	test/end_to_end/ai_assisted_debugging/end_to_end_hybrid_test.exs	End-to-end test.
elixir_scope/llm/context_builder_test.exs	test/unit/intelligence/ai/llm/context_builder_test.exs (new file, assuming was part of llm/)	Unit test.
elixir_scope/llm/hybrid_analyzer_test.exs	test/functional/ai_integration/hybrid_analyzer_test.exs (new file, assuming was part of llm/)	Functional test.
elixir_scope/performance/hybrid_benchmarks_test.exs	test/performance/benchmarks/hybrid_benchmarks_test.exs	Performance benchmark.
elixir_scope/phoenix/integration_test.exs	test/integration/phoenix_project_analysis/integration_test.exs (or just test/integration/phoenix/)	Integration test.
elixir_scope/query/engine_test.exs	test/unit/query/legacy/engine_test.exs	Unit test for legacy query engine.
elixir_scope/storage/data_access_test.exs	test/unit/capture/storage/storage/data_access_test.exs	Unit test.
elixir_scope/storage/event_store_test.exs	test/unit/capture/storage/storage/event_store_test.exs	Unit test.
elixir_scope/utils_test.exs	test/unit/foundation/utils_test.exs	Unit test for foundation utils.
elixir_scope_test.exs	test/unit/elixir_scope_test.exs (or test/functional/ if it tests core app functionality)	Main app test.
test_helper.exs	test/test_helper.exs	Test helper.
fixtures/sample_elixir_project/	test/fixtures/sample_projects/ (content would merge or be categorized)	Fixture.
fixtures/sample_project/	test/fixtures/sample_projects/ (content would merge or be categorized)	Fixture.
integration/production_phoenix_test.exs	test/end_to_end/phoenix_project_analysis/production_phoenix_test.exs	End-to-end test.
support/ai_test_helpers.ex	test/support/generators/ai_test_helpers.ex (or test/support/helpers.ex if general)	Test helper.
support/test_phoenix_app.ex	test/support/fixtures/phoenix_app.ex (or test/fixtures/sample_projects/phoenix_app/)	Test helper / fixture.

Important Considerations for Test File Mappings:

• The new test structure is highly organized. The "best guess" above tries to place tests into semantically correct categories (unit, integration, functional, contract, end_to_end, performance, property, scenarios).
• Some old tests might be split, merged, or refactored to fit the new structure.
• Tests in test/orig/ are likely older versions or those that don't fit the new categories directly.
• The elixir_scope/ast_repository/test_support/ directory from the old structure has its contents spread across test/support/fixtures/, test/support/helpers/, etc. in the new structure.

This report provides a comprehensive mapping based on the provided structures. The actual migration might involve further decisions based on the specific content and intent of each file.