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CHANGES.txt
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0.4.1, 7/28/2013 -- First stable release.
0.4.2, 7/28/2013 -- Added a README.txt for Contributers and Thank-yous.
0.4.2.1, 7/28/2013 -- README.rst modifications for public pypi release, bumped dependency version reqs.
0.4.3, 7/28/2013 -- Minor bugfix in extraction metrics.
0.4.3.1, 7/29/2013 -- Reduced version req for numpy from 1.7 to 1.6.2
0.4.3.2, 7/30/2013 -- Fixed wrong URLs in documentation.
0.5.0, 11/5/2013 -- active_runs branch merged, handles incomplete data for TileMetrics, IndexMetrics, and QualityMetrics.
0.5.1, 11/5/2013 -- relaxed requirements for numpy (1.6 rather than 1.7)
0.5.2, 11/5/2013 -- fix to __init__.py (how did that change get lost?)
0.5.3, 11/13/2013 -- critical bugfix for ExtractionMetrics parser (patch by Brent Calder). runParameters.xml now also parsed by default.
0.5.4, 2/19/2014 -- critical bugfix for ExtractionMetrics (pull req by @outerjw on bitbucket), now correctly parses datetimes.
0.5.4.1, 2/20/2014 -- minor bugfix to running interop.py on command line (lack of 'error' binary no longer causes process to end).
0.5.5, 2/21/2014 -- Made `illuminate` a real command-line script. Critical bugfix to InteropDataset preventing .CorrectedIntensityMetrics() from working.
0.5.5.1, 2/21/2014 -- documentation edits to reflect most recent changes. Added optimistic line about dump-to-json and dump-to-csv "coming soon".
0.5.6, 2/26/2014 -- Implemented to_csv method on InteropBinParser, added --csv and --debug options to CLI. Improvements to Metadata logic. Better code organization.
0.5.7, 2/27/2014 -- Implemented to_json method on InteropBinParser, added --json option to CLI. Upped pandas req to 0.12 based on need for json support.
0.5.7.1, 3/3/2014 -- Tweak to prevent runParameters parsing from breaking if ExperimentName is not present.
0.5.7.2, 3/3/2014 -- Revamp of runParameters parsing to accommodate newer HiSeq format. Fed up with ElementTree, switching to xmltodict.
0.5.7.3 3/6/2014 -- Added make_test_data to base_parser_class.py (see docstring), only 'quality' supported. Purged dmesg from utils (yay).
0.5.8, 6/21/2014 -- Adjusted pandas usage to match pandas 0.14 requirements.
0.5.9, 3/9/2015 -- IndexMetrics.results dict now maps index_str to { project, name, clusters } (nested dict).
0.5.10, 3/17/2015 -- Support for Illumina v4 QualityMetrics "binning" bit (though not the actually binning, yet). Thanks to Nofar Chen for the contribution.
0.6.0, 4/30/2015 -- Full support for Illumina v4 "binned" QualityMetrics. Thanks to Manuel Kohler.
0.6.0.1, 4/30/2015 -- README edits to reflect v4 support.
0.6.1, 5/1/2015 -- Protecting TileMetrics against absence of alignment data.
0.6.2, 6/15/2015 -- Model calculation in InteropMetadata. Thanks to Connor Hogan.
0.6.3, 7/17/2015 -- Python 3.x support. Thanks to Matthew Halbert.
0.6.3.1, 8/27/2015 -- Updated contact info.
0.6.4, 12/26/2017 -- Support for QMetricsOut.bin v6. Thanks to Andrew Dei Rossi (@aadeirossi).
0.6.5, 10/18/2017 -- Support for IndexMetrics.bin v2. Thanks to Tom Morris (@tfmorris).
0.6.7, 8/15/2024 -- Support for NextSeq (NB) and NovaSeq 6000. Thanks to Dave Lawrence (@davmlaw).