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rCAX 1.0.3

  • updated urls to nwfsc-cb from nwfsc-math-bio when Math Bio GitHub was merged into the CB org.
  • updated the license to GPL-3

rCAX 1.0.2

  • Added info on accessing an API key saved in a .Renviron file in the api-get.Rmd vignette.
  • Added CC0 License file to repo

rCAX 1.0.1

  • First production release.
  • Updated CITATION with DOI; updated DESCRIPTION with better title

rCAX 0.10.0

  • merged rcax_hli() and rcax_hli_xport()
  • a message terms of use is not written when the package is loaded
  • documentation: cleaned up basics.Rmd, only have API reference for the base API functions, edited the Readme. Added cax.Rmd with more details on the CAX database.
  • renamed rcax_tables() to rcax_datasets() to match pycax package
  • Added "About CAX" vignette cax.Rmd
  • Some clean-up related to spelling check

rCAX 0.9.0

https://github.com/nwfsc-cb/rCAX/releases/tag/v0.9.0

  • Removed API key info as rCAX now includes an internal read-only key
  • Add plot to basics.Rmd
  • Allow cols and sortcols in rcax_table_query() to be numbers, although the results might be non-intuitive for rcax_hli_xport() since the number will refer to the column order in the table before the columns are sorted into the order found in the downloaded Excel files.

rCAX 0.8.0

https://github.com/nwfsc-cb/rCAX/releases/tag/v0.8.0

  • Condensed all the _xport functions into one function rcax_hli_xport() with argument hli to specify which HLI.
  • Condensed all the individual HLI functions into one function rcax_hli() with argument hli to specify which HLI.
  • Cleaned up the API vignette as it was out of date. Updated basics.Rmd given the changes to the functions.
  • Added rcax_table_name() to look up the table based on XPort versus base and for a HLI short code.
  • Added rcax_table_cols() and rcax_table_sortcols() to return these based on XPort versus base and for a HLI short code.
  • Added 'hli' and 'hli_id' to the cax_column_definitions internal data.
  • Added CITATION

rCAX 0.7.0

https://github.com/nwfsc-cb/rCAX/releases/tag/v0.7.0

  • Added a setup vignette for how to download and install the package.
  • Removed rcax_key(). Not needed. Cleaned up some {rredlist} refs.
  • Added rcax_version() to print the installed versus GitHub version.
  • Added cax_column_definitions from the definitions tab in the Excel files output by the HLI Tabular Query.
  • type="colnames" now returns a data frame with a name and definition column.
  • Added documentation for the internal data.
  • Added RCMD check badge and workflow, did some minor cleanup to pass check.

rCAX 0.6.0

https://github.com/nwfsc-cb/rCAX/releases/tag/v0.6.0

  • Added rcax_pni_xport(), rcax_rpers_xport(), rcax_juvout_xport(), rcax_presmolt_xport(), rcax_presmolt(), rcax_pni(), rcax_sar(), rcax_rpers(), rcax_presmolt()
  • Added template roxygen for all XPort and base table functions. Now details and description elements are identical.
  • Dynamically find a NMFS PopID or PopID for the examples so that the examples never return an empty table.
  • in rcax_table_query() set rownames to NULL in returned tables
  • Added ggplot2 to Suggests in DESCRIPTION file since I use it in some examples and will use in vignettes.
  • removed {stringr} and |> dependency
  • Added a check that all the flist names appear in the table. Requires an extra GET call but the call will fail otherwise if cols do not match.

rCAX 0.5.0

https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.5.0

  • Added rcax_termsofuse() and a Terms of Use vignette. Add more links in Readme to StreamNet data use policies.
  • Added rcax_nosa_xport() which is the data table available on https://www.streamnet.org/data/hli/ when one downloads a NOSA table
  • Added rcax_sar_xport() which is the data table available on https://www.streamnet.org/data/hli/ when one downloads a SAR table
  • Made rcax_table_query() more robust if the cols passed in do not match what is in the table. It will print a warning and only show cols that do appear. Also I added tolower(cols) and tolower(sortcols) so that these are case insensitive.
  • Added nosa_xport_colnames to sysdata.rda. This is somewhat fragile since StreamNet might change the column names. The code to create the system data is in inst/docs.

rCAX 0.4.0

https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.4.0

  • added more sysdata: caxpops The Populations table. I had to download table from StreamNet since the "Populations" table query is throwing an error). Also added caxesu: ESU_DPS names and caxsuperpops: The SuperPopulations table.
  • created rcax_table_query() as the base function for all the table query functions. That way I am not repeating the same code for each table.
  • added info to rcax_table_query() documentation about the possible query parameters.
  • added the rcax_filter() function to allow filtering the tables. Added examples in basics.Rmd.

rCAX 0.3.0

  • Add the tables vignette.
  • Add CAX table dataframe to sysdata.rda

rCAX 0.2.0

https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.2.0

  • Cleaned up rcax_nosa() and figured out that you can pass in popid as a query parameter. Subset the columns.
  • Make rcax_tables() to get the table ids that we need for queries.

rCAX 0.1.0

https://github.com/nwfsc-math-mbio/rCAX/releases/tag/v0.1.0

  • Got the API get function working