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Dockerfile.intel
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FROM intel/oneapi-hpckit:latest
RUN apt update \
&& apt install -y software-properties-common \
&& add-apt-repository universe \
&& apt update \
&& apt install -y \
build-essential \
make \
libhdf5-dev \
libnetcdf-dev \
libnetcdff-dev \
libmetis-dev \
liblapack-dev \
libopenblas-dev \
libgsl-dev \
cmake \
&& apt clean
# set compilers
ENV CC=icx
ENV CXX=icpx
ENV FC=ifx
# Build the SuiteSparse libraries for sparse matrix support
# (-k included because of problem with SuiteSparse security certificate - 1 Aug 2021)
RUN curl -kLO http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.1.0.tar.gz \
&& tar -zxvf SuiteSparse-5.1.0.tar.gz \
&& cd SuiteSparse \
&& make install INSTALL=/usr/local BLAS="-L/lib64 -lopenblas"
# Install json-fortran
RUN curl -LO https://github.com/jacobwilliams/json-fortran/archive/6.1.0.tar.gz \
&& tar -zxvf 6.1.0.tar.gz \
&& cd json-fortran-6.1.0 \
&& mkdir build \
&& cd build \
&& cmake -D SKIP_DOC_GEN:BOOL=TRUE .. \
&& make install
# copy CVODE source
COPY cvode-3.4-alpha.tar.gz /cvode-3.4-alpha.tar.gz
# Install a modified version of CVODE
RUN tar -zxvf /cvode-3.4-alpha.tar.gz \
&& cd cvode-3.4-alpha \
&& mkdir build \
&& cd build \
&& cmake -D CMAKE_BUILD_TYPE=release \
-D CMAKE_C_FLAGS_DEBUG="-g -pg" \
-D CMAKE_EXE_LINKER_FLAGS_DEBUG="-pg" \
-D CMAKE_MODULE_LINKER_FLAGS_DEBUG="-pg" \
-D CMAKE_SHARED_LINKER_FLAGS_DEBUG="-pg" \
-D KLU_ENABLE:BOOL=TRUE \
-D KLU_LIBRARY_DIR=/usr/local/lib \
-D KLU_INCLUDE_DIR=/usr/local/include \
.. \
&& make install
# copy CAMP source code and data
COPY . /camp
# Update environment variables
ENV LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/lib:/usr/local/lib64:/usr/local/jsonfortran-gnu-6.1.0/lib"
ENV PATH="${PATH}:/usr/local/jsonfortran-gnu-6.1.0/lib"
# Build CAMP
RUN mkdir build \
&& cd build \
&& export JSON_FORTRAN_HOME="/usr/local/jsonfortran-intelllvm-6.1.0" \
&& cmake -D CMAKE_BUILD_TYPE=release \
-D CMAKE_C_FLAGS_DEBUG="-pg" \
-D CMAKE_Fortran_FLAGS_DEBUG="-pg" \
-D CMAKE_MODULE_LINKER_FLAGS="-pg" \
/camp \
&& make -j install
WORKDIR /build