diff --git a/CHANGELOG.md b/CHANGELOG.md index 2b36fd3b..f78ad775 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,10 +1,25 @@ # Release notes -## [Upcoming release](https://github.com/open2c/cooltools/compare/v0.5.4...HEAD) +## [Upcoming release](https://github.com/open2c/cooltools/compare/v0.6.0...HEAD) -* snipping: fix spurious nan->0 conversion of bad bins in on-diagonal pileups +## [v0.6.0](https://github.com/open2c/cooltools/compare/v0.5.4...v0.6.0) + +### New features +* New function/tool `rearrange_cooler` to reorder/subset/flip regions of the genome in a cooler +* New test dataset for micro-C from hESCs + +### API changes * snipping: reorder the axes of the output snipper array to (snippet_idx, i, j). +### Maintenance + +* snipping: fix spurious nan->0 conversion of bad bins in on-diagonal pileups +* snipping: fix snipping without provided view +* snipping: fix for storing the stack in a file +* virtual4c: fix for the case when viewpoint has no contacts +* fix: Fix numba deprecation warnings by adding `nopython=True` +* Other small bugfixes + ## [v0.5.4](https://github.com/open2c/cooltools/compare/v0.5.3...v0.5.4) ### Maintenance diff --git a/cooltools/__init__.py b/cooltools/__init__.py index 66514f5d..a74fc7fe 100644 --- a/cooltools/__init__.py +++ b/cooltools/__init__.py @@ -11,7 +11,7 @@ """ import logging -__version__ = "0.5.4" +__version__ = "0.6.0" from . import lib