Add citation file #25
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| name: CI-CD | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - '*' | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel pipenv | |
| pip install -r test/requirements.txt | |
| pip install pipdeptree==0.13.1 | |
| - name: Test with pytest | |
| run: | | |
| pip install pytest | |
| pip install pytest-cov | |
| py.test --cov=./ --cov-report=xml -s test/test_core/test_CobraMetabolicModel.py | |
| py.test --cov=./ --cov-report=xml -s test/test_cli/test_contrabass_cli.py | |
| - name: "Upload coverage to Codecov" | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| fail_ci_if_error: true | |
| sonarcloud: | |
| name: SonarCloud | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 # Shallow clones should be disabled for a better relevancy of analysis | |
| - name: SonarCloud Scan | |
| uses: SonarSource/sonarcloud-github-action@master | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.TOKEN_GITHUB }} # Needed to get PR information, if any | |
| SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }} | |
| release: | |
| needs: test | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install twine | |
| - name: Build package | |
| run: | | |
| python setup.py sdist bdist_wheel | |
| - name: Twine upload | |
| env: | |
| TWINE_USERNAME: ${{ secrets.PYPI_USERNAME }} | |
| TWINE_PASSWORD: ${{ secrets.PYPI_PASSWORD }} | |
| run: | | |
| python -m twine upload --skip-existing --non-interactive dist/* | |
| - name: Test install | |
| run: | | |
| pip install contrabass | |
| - name: GitHub release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.TOKEN_GITHUB }} | |
| with: | |
| tag_name: ${{ github.ref }} | |
| release_name: ${{ github.ref }} | |
| body_path: "" | |
| draft: false | |
| prerelease: false |