diff --git a/analysis/measures_definition_pf_codes_conditions.py b/analysis/measures_definition_pf_codes_conditions.py index e9d5e8f..2ecdcbf 100644 --- a/analysis/measures_definition_pf_codes_conditions.py +++ b/analysis/measures_definition_pf_codes_conditions.py @@ -11,7 +11,7 @@ ethnicity_codelist, ) -from pf_dataset import pharmacy_first_event_codes, pharmacy_first_codes +from pf_dataset import pharmacy_first_event_codes measures = create_measures() measures.configure_dummy_data(population_size=1000) @@ -94,7 +94,7 @@ ) pharmacy_first_ids = clinical_events.where( - clinical_events.snomedct_code.is_in(pharmacy_first_codes) + clinical_events.snomedct_code.is_in(pharmacy_first_event_codes["combined_pf_service"]) ).consultation_id # Select clinical events in interval date range diff --git a/analysis/pf_dataset.py b/analysis/pf_dataset.py index 7e8216b..1c9d0ba 100644 --- a/analysis/pf_dataset.py +++ b/analysis/pf_dataset.py @@ -10,16 +10,9 @@ "consultation_service": ["1577041000000109"], # Pharmacy First service (qualifier value) "pharmacy_first_service": ["983341000000102"], - "combined_service": ["1577041000000109", "983341000000102"], + "combined_pf_service": ["1577041000000109", "983341000000102"], } -# Pharmacy first clinical codes -pharmacy_first_codes = [ - "1659111000000107", - "1659121000000101", - "1577041000000109", - "983341000000102", -] # Create denominator variables for each clinical condition # These are based on NHS England rules using sex, age, pregnancy status and repeated diagnoses diff --git a/reports/pharmacy_first_report.Rmd b/reports/pharmacy_first_report.Rmd index cf33ab8..6238925 100644 --- a/reports/pharmacy_first_report.Rmd +++ b/reports/pharmacy_first_report.Rmd @@ -45,7 +45,7 @@ pf_measures_name_mapping <- list( # contraception_service = "clinical_service", consultation_service = "clinical_service", pharmacy_first_service = "clinical_service", - combined_service = "pharmacy_first_services", + combined_pf_service = "pharmacy_first_services", acute_otitis_media = "clinical_condition", herpes_zoster = "clinical_condition", acute_sinusitis = "clinical_condition",