biosystem contains tissue, organ labels mappings to UBERON; while labels to cell lines to Cell-line ontology.
depmap_uberon_mappings.csv - This file contains mapping of disease cell lines from DepMap and Sanger's Cell Model Passport dataset to the originating tissue. The mapping is done partially by automatic processes, then a manual curation step was applied to finalise the mappings.
Schema:
root
|-- tissueFromSource: string (nullable = true)
|-- tissueId: string (nullable = true)
|-- tissueName: string (nullable = true)
Where tissueFromSource is an all-lower case label for the tissue as represented at the source. tissueId is the short form of mapped uberon or CLO identifier. tissueName is the label of the mapped term at the ontology.
disease. Labels of diseases mapped to the EFO ontology. This directory is pending to be harmonised under a common file (see #1400 for context).