diff --git a/docs/assets/genetics_portal_logo-1.png b/docs/assets/genetics_portal_logo-1.png deleted file mode 100644 index 999714271..000000000 Binary files a/docs/assets/genetics_portal_logo-1.png and /dev/null differ diff --git a/docs/assets/imgs/GWAS_Catalog_circle_178x178.png b/docs/assets/imgs/GWAS_Catalog_circle_178x178.png new file mode 100644 index 000000000..3cfa2a747 Binary files /dev/null and b/docs/assets/imgs/GWAS_Catalog_circle_178x178.png differ diff --git a/docs/assets/Open_Targets_Genetics_Portal_Logo_v2_font.svg b/docs/assets/imgs/Open_Targets_Genetics_Portal_Logo_v2_font.svg similarity index 100% rename from docs/assets/Open_Targets_Genetics_Portal_Logo_v2_font.svg rename to docs/assets/imgs/Open_Targets_Genetics_Portal_Logo_v2_font.svg diff --git a/docs/assets/imgs/UK_biobank_logo.png b/docs/assets/imgs/UK_biobank_logo.png new file mode 100644 index 000000000..7faa2f97b Binary files /dev/null and b/docs/assets/imgs/UK_biobank_logo.png differ diff --git a/docs/assets/favicon.png b/docs/assets/imgs/favicon.png similarity index 100% rename from docs/assets/favicon.png rename to docs/assets/imgs/favicon.png diff --git a/docs/assets/imgs/finngen.svg b/docs/assets/imgs/finngen.svg new file mode 100644 index 000000000..e5fcfb4f3 --- /dev/null +++ b/docs/assets/imgs/finngen.svg @@ -0,0 +1,27 @@ + + + Page 1 + Created with Sketch. + + + + + + + + + + + + + + + + + + + + + + + diff --git a/docs/assets/imgs/gnomad.svg b/docs/assets/imgs/gnomad.svg new file mode 100644 index 000000000..b066ef269 --- /dev/null +++ b/docs/assets/imgs/gnomad.svg @@ -0,0 +1,4 @@ + + + + diff --git a/docs/assets/imgs/open_targets_platform.svg b/docs/assets/imgs/open_targets_platform.svg new file mode 100644 index 000000000..8d17ee1d8 --- /dev/null +++ b/docs/assets/imgs/open_targets_platform.svg @@ -0,0 +1 @@ + diff --git a/docs/assets/otlogo.png b/docs/assets/imgs/otlogo.png similarity index 100% rename from docs/assets/otlogo.png rename to docs/assets/imgs/otlogo.png diff --git a/docs/components/datasource/finngen/_finngen.md b/docs/components/datasource/finngen/_finngen.md deleted file mode 100644 index e3017fbec..000000000 --- a/docs/components/datasource/finngen/_finngen.md +++ /dev/null @@ -1 +0,0 @@ -# FinnGen diff --git a/docs/components/datasource/gnomad/_gnomad.md b/docs/components/datasource/gnomad/_gnomad.md deleted file mode 100644 index dbfa3a229..000000000 --- a/docs/components/datasource/gnomad/_gnomad.md +++ /dev/null @@ -1 +0,0 @@ -# GnomAD diff --git a/docs/components/datasource/gwas_catalog/_gwas_catalog.md b/docs/components/datasource/gwas_catalog/_gwas_catalog.md deleted file mode 100644 index 00a668fbb..000000000 --- a/docs/components/datasource/gwas_catalog/_gwas_catalog.md +++ /dev/null @@ -1 +0,0 @@ -# GWAS Catalog diff --git a/docs/components/datasource/open_targets/_open_targets.md b/docs/components/datasource/open_targets/_open_targets.md deleted file mode 100644 index 916b22c92..000000000 --- a/docs/components/datasource/open_targets/_open_targets.md +++ /dev/null @@ -1 +0,0 @@ -# Open Targets Platform diff --git a/docs/components/datasource/ukbiobank/_ukbiobank.md b/docs/components/datasource/ukbiobank/_ukbiobank.md deleted file mode 100644 index 16c076b4a..000000000 --- a/docs/components/datasource/ukbiobank/_ukbiobank.md +++ /dev/null @@ -1 +0,0 @@ -# UK Biobank diff --git a/docs/components/method/_method.md b/docs/components/method/_method.md deleted file mode 100644 index eef793d4c..000000000 --- a/docs/components/method/_method.md +++ /dev/null @@ -1,2 +0,0 @@ - -Methods used accross the Open Targets Genetics Pipeline diff --git a/docs/contributing/_contributing.md b/docs/contributing/_contributing.md new file mode 100644 index 000000000..188cafbe5 --- /dev/null +++ b/docs/contributing/_contributing.md @@ -0,0 +1,3 @@ +# Contributing + +TBC diff --git a/docs/contributing.md b/docs/contributing/guidelines.md similarity index 99% rename from docs/contributing.md rename to docs/contributing/guidelines.md index 52c06078b..85a61de57 100644 --- a/docs/contributing.md +++ b/docs/contributing/guidelines.md @@ -1,4 +1,8 @@ -# Environment configuration and contributing changes +--- +title: Guidelines +--- + +# Contributing guidelines ## One-time configuration The steps in this section only ever need to be done once on any particular system. diff --git a/docs/troubleshooting.md b/docs/contributing/troubleshooting.md similarity index 98% rename from docs/troubleshooting.md rename to docs/contributing/troubleshooting.md index 9d1156765..b9f7385da 100644 --- a/docs/troubleshooting.md +++ b/docs/contributing/troubleshooting.md @@ -1,3 +1,7 @@ +--- +title: Troubleshooting +--- + # Troubleshooting ## BLAS/LAPACK diff --git a/docs/index.md b/docs/index.md index 697cde46e..fa4ec5d40 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,6 +1,12 @@ +--- +title: Open Targets Genetics +hide: + - navigation + - toc +---

- +

+ +[TOC] diff --git a/docs/components/datasource/finngen/study_index.md b/docs/python_api/datasource/finngen/study_index.md similarity index 100% rename from docs/components/datasource/finngen/study_index.md rename to docs/python_api/datasource/finngen/study_index.md diff --git a/docs/python_api/datasource/gnomad/_gnomad.md b/docs/python_api/datasource/gnomad/_gnomad.md new file mode 100644 index 000000000..fa824445b --- /dev/null +++ b/docs/python_api/datasource/gnomad/_gnomad.md @@ -0,0 +1,9 @@ +

+ +

+ diff --git a/docs/components/datasource/gnomad/gnomad_ld.md b/docs/python_api/datasource/gnomad/gnomad_ld.md similarity index 100% rename from docs/components/datasource/gnomad/gnomad_ld.md rename to docs/python_api/datasource/gnomad/gnomad_ld.md diff --git a/docs/components/datasource/gnomad/gnomad_variants.md b/docs/python_api/datasource/gnomad/gnomad_variants.md similarity index 100% rename from docs/components/datasource/gnomad/gnomad_variants.md rename to docs/python_api/datasource/gnomad/gnomad_variants.md diff --git a/docs/python_api/datasource/gwas_catalog/_gwas_catalog.md b/docs/python_api/datasource/gwas_catalog/_gwas_catalog.md new file mode 100644 index 000000000..b0ce453c0 --- /dev/null +++ b/docs/python_api/datasource/gwas_catalog/_gwas_catalog.md @@ -0,0 +1,6 @@ +
+ +

GWAS Catalog

+
+ +[TOC] diff --git a/docs/components/datasource/gwas_catalog/associations.md b/docs/python_api/datasource/gwas_catalog/associations.md similarity index 100% rename from docs/components/datasource/gwas_catalog/associations.md rename to docs/python_api/datasource/gwas_catalog/associations.md diff --git a/docs/components/datasource/gwas_catalog/study_index.md b/docs/python_api/datasource/gwas_catalog/study_index.md similarity index 100% rename from docs/components/datasource/gwas_catalog/study_index.md rename to docs/python_api/datasource/gwas_catalog/study_index.md diff --git a/docs/components/datasource/gwas_catalog/study_splitter.md b/docs/python_api/datasource/gwas_catalog/study_splitter.md similarity index 100% rename from docs/components/datasource/gwas_catalog/study_splitter.md rename to docs/python_api/datasource/gwas_catalog/study_splitter.md diff --git a/docs/components/datasource/gwas_catalog/summary_statistics.md b/docs/python_api/datasource/gwas_catalog/summary_statistics.md similarity index 100% rename from docs/components/datasource/gwas_catalog/summary_statistics.md rename to docs/python_api/datasource/gwas_catalog/summary_statistics.md diff --git a/docs/components/datasource/intervals/_intervals.md b/docs/python_api/datasource/intervals/_intervals.md similarity index 100% rename from docs/components/datasource/intervals/_intervals.md rename to docs/python_api/datasource/intervals/_intervals.md diff --git a/docs/components/datasource/intervals/andersson.md b/docs/python_api/datasource/intervals/andersson.md similarity index 100% rename from docs/components/datasource/intervals/andersson.md rename to docs/python_api/datasource/intervals/andersson.md diff --git a/docs/components/datasource/intervals/javierre.md b/docs/python_api/datasource/intervals/javierre.md similarity index 100% rename from docs/components/datasource/intervals/javierre.md rename to docs/python_api/datasource/intervals/javierre.md diff --git a/docs/components/datasource/intervals/jung.md b/docs/python_api/datasource/intervals/jung.md similarity index 100% rename from docs/components/datasource/intervals/jung.md rename to docs/python_api/datasource/intervals/jung.md diff --git a/docs/components/datasource/intervals/thurman.md b/docs/python_api/datasource/intervals/thurman.md similarity index 100% rename from docs/components/datasource/intervals/thurman.md rename to docs/python_api/datasource/intervals/thurman.md diff --git a/docs/python_api/datasource/open_targets/_open_targets.md b/docs/python_api/datasource/open_targets/_open_targets.md new file mode 100644 index 000000000..575b1be95 --- /dev/null +++ b/docs/python_api/datasource/open_targets/_open_targets.md @@ -0,0 +1,9 @@ +

+ +

+ diff --git a/docs/components/datasource/open_targets/target.md b/docs/python_api/datasource/open_targets/target.md similarity index 100% rename from docs/components/datasource/open_targets/target.md rename to docs/python_api/datasource/open_targets/target.md diff --git a/docs/python_api/datasource/ukbiobank/_ukbiobank.md b/docs/python_api/datasource/ukbiobank/_ukbiobank.md new file mode 100644 index 000000000..3ebb93a21 --- /dev/null +++ b/docs/python_api/datasource/ukbiobank/_ukbiobank.md @@ -0,0 +1,9 @@ +

+ +

+ diff --git a/docs/components/datasource/ukbiobank/study_index.md b/docs/python_api/datasource/ukbiobank/study_index.md similarity index 100% rename from docs/components/datasource/ukbiobank/study_index.md rename to docs/python_api/datasource/ukbiobank/study_index.md diff --git a/docs/python_api/method/_method.md b/docs/python_api/method/_method.md new file mode 100644 index 000000000..402ec4d0e --- /dev/null +++ b/docs/python_api/method/_method.md @@ -0,0 +1 @@ +TBC diff --git a/docs/components/method/clumping.md b/docs/python_api/method/clumping.md similarity index 100% rename from docs/components/method/clumping.md rename to docs/python_api/method/clumping.md diff --git a/docs/components/method/coloc.md b/docs/python_api/method/coloc.md similarity index 100% rename from docs/components/method/coloc.md rename to docs/python_api/method/coloc.md diff --git a/docs/components/method/ecaviar.md b/docs/python_api/method/ecaviar.md similarity index 100% rename from docs/components/method/ecaviar.md rename to docs/python_api/method/ecaviar.md diff --git a/docs/components/method/ld_annotator.md b/docs/python_api/method/ld_annotator.md similarity index 100% rename from docs/components/method/ld_annotator.md rename to docs/python_api/method/ld_annotator.md diff --git a/docs/components/method/pics.md b/docs/python_api/method/pics.md similarity index 100% rename from docs/components/method/pics.md rename to docs/python_api/method/pics.md diff --git a/docs/components/method/window_based_clumping.md b/docs/python_api/method/window_based_clumping.md similarity index 100% rename from docs/components/method/window_based_clumping.md rename to docs/python_api/method/window_based_clumping.md diff --git a/docs/python_api/step/_step.md b/docs/python_api/step/_step.md new file mode 100644 index 000000000..33d345dae --- /dev/null +++ b/docs/python_api/step/_step.md @@ -0,0 +1,3 @@ +# Step + +TBC diff --git a/docs/components/step/colocalisation.md b/docs/python_api/step/colocalisation.md similarity index 100% rename from docs/components/step/colocalisation.md rename to docs/python_api/step/colocalisation.md diff --git a/docs/components/step/finngen.md b/docs/python_api/step/finngen.md similarity index 100% rename from docs/components/step/finngen.md rename to docs/python_api/step/finngen.md diff --git a/docs/components/step/gene_index.md b/docs/python_api/step/gene_index.md similarity index 100% rename from docs/components/step/gene_index.md rename to docs/python_api/step/gene_index.md diff --git a/docs/components/step/gwas_catalog.md b/docs/python_api/step/gwas_catalog.md similarity index 100% rename from docs/components/step/gwas_catalog.md rename to docs/python_api/step/gwas_catalog.md diff --git a/docs/components/step/gwas_catalog_sumstat_preprocess.md b/docs/python_api/step/gwas_catalog_sumstat_preprocess.md similarity index 100% rename from docs/components/step/gwas_catalog_sumstat_preprocess.md rename to docs/python_api/step/gwas_catalog_sumstat_preprocess.md diff --git a/docs/components/step/ld_index.md b/docs/python_api/step/ld_index.md similarity index 100% rename from docs/components/step/ld_index.md rename to docs/python_api/step/ld_index.md diff --git a/docs/components/step/ukbiobank.md b/docs/python_api/step/ukbiobank.md similarity index 100% rename from docs/components/step/ukbiobank.md rename to docs/python_api/step/ukbiobank.md diff --git a/docs/components/step/variant_annotation_step.md b/docs/python_api/step/variant_annotation_step.md similarity index 100% rename from docs/components/step/variant_annotation_step.md rename to docs/python_api/step/variant_annotation_step.md diff --git a/docs/components/step/variant_index_step.md b/docs/python_api/step/variant_index_step.md similarity index 100% rename from docs/components/step/variant_index_step.md rename to docs/python_api/step/variant_index_step.md diff --git a/docs/components/step/variant_to_gene_step.md b/docs/python_api/step/variant_to_gene_step.md similarity index 100% rename from docs/components/step/variant_to_gene_step.md rename to docs/python_api/step/variant_to_gene_step.md diff --git a/docs/roadmap.md b/docs/roadmap.md index ff7e99be4..d1c8c5e03 100644 --- a/docs/roadmap.md +++ b/docs/roadmap.md @@ -1,4 +1,9 @@ - +--- +title: Roadmap +hide: + - navigation + - toc +--- # Roadmap The Open Targets core team is working on refactoring Open Targets Genetics, aiming to: diff --git a/docs/usage.md b/docs/usage.md new file mode 100644 index 000000000..4d6c97d1b --- /dev/null +++ b/docs/usage.md @@ -0,0 +1,10 @@ +--- +Title: How-to +hide: + - navigation + - toc +--- + +# How-to + +TBC diff --git a/mkdocs.yml b/mkdocs.yml index 8e0d41f32..3d043e45f 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -1,4 +1,10 @@ -site_name: Genetics Portal Pipeline +site_name: Open Targets Genetics + +nav: + - installation.md + - usage.md + - ... | contributing/** + - ... | python_api/** plugins: - search @@ -32,6 +38,10 @@ markdown_extensions: - pymdownx.superfences - pymdownx.snippets: base_path: "docs" + - pymdownx.highlight + - pymdownx.superfences + - toc: + permalink: true hooks: - src/scripts/schemadocs.py @@ -41,17 +51,18 @@ repo_url: https://github.com/opentargets/genetics_etl_python theme: name: "material" - favicon: assets/favicon.png - logo: assets/otlogo.png + favicon: assets/imgs/favicon.png + logo: assets/imgs/otlogo.png custom_dir: docs/assets/overrides features: - navigation.instant - navigation.top + - navigation.tabs + - navigation.tabs.sticky - content.code.annotate - search.suggest - search.highlight - palette: # Light mode - media: "(prefers-color-scheme: light)" diff --git a/poetry.lock b/poetry.lock index d893734dd..b1302c2ad 100644 --- a/poetry.lock +++ b/poetry.lock @@ -100,7 +100,7 @@ trio = ["trio (>=0.22)"] [[package]] name = "apache-airflow" -version = "2.7.1" +version = "2.7.2" description = "Programmatically author, schedule and monitor data pipelines" category = "dev" optional = false @@ -165,7 +165,7 @@ rfc3339-validator = ">=0.1.4" rich = ">=12.4.4" rich-argparse = ">=1.0.0" setproctitle = ">=1.1.8" -sqlalchemy = ">=1.4.24,<2.0" +sqlalchemy = ">=1.4.28,<2.0" sqlalchemy-jsonfield = ">=1.0" tabulate = ">=0.7.5" tenacity = ">=6.2.0,<8.2.0 || >8.2.0" @@ -218,13 +218,13 @@ databricks = ["apache-airflow-providers-databricks"] datadog = ["apache-airflow-providers-datadog"] dbt-cloud = ["apache-airflow-providers-dbt-cloud"] deprecated-api = ["requests (>=2.26.0)"] -devel = ["aiobotocore (>=2.1.1)", "aioresponses", "apache-airflow (>=2.4.0)", "apache-airflow-providers-common-sql", "astroid (>=2.12.3)", "aws-xray-sdk", "bcrypt (>=2.0.0)", "beautifulsoup4 (>=4.7.1)", "black", "blinker", "cgroupspy (>=0.2.2)", "checksumdir", "click (>=8.0)", "click (>=8.0,!=8.1.4,!=8.1.5)", "coverage (>=7.2)", "cryptography (>=2.0.0)", "docutils (<0.17.0)", "eralchemy2", "filelock", "flask-bcrypt (>=0.7.1)", "gitpython", "ipdb", "jsonschema (>=3.0)", "kubernetes (>=21.7.0,<24)", "mongomock", "moto[glue] (>=4.0)", "mypy (==1.2.0)", "mypy-boto3-appflow (>=1.28.0)", "mypy-boto3-rds (>=1.28.0)", "mypy-boto3-redshift-data (>=1.28.0)", "mypy-boto3-s3 (>=1.28.0)", "mysqlclient (>=1.3.6)", "openapi-spec-validator (>=0.2.8)", "pandas (>=0.17.1)", "pipdeptree", "pre-commit", "pyarrow (>=9.0.0)", "pygithub", "pytest", "pytest-asyncio", "pytest-capture-warnings", "pytest-cov", "pytest-httpx", "pytest-instafail", "pytest-mock", "pytest-rerunfailures", "pytest-timeouts", "pytest-xdist", "pywinrm", "requests-mock", "rich-click (>=1.5)", "ruff (>=0.0.219)", "semver", "sphinx (>=5.2.0)", "sphinx-airflow-theme", "sphinx-argparse (>=0.1.13)", "sphinx-autoapi (>=2.0.0)", "sphinx-copybutton", "sphinx-jinja (>=2.0)", "sphinx-rtd-theme (>=0.1.6)", "sphinxcontrib-httpdomain (>=1.7.0)", "sphinxcontrib-redoc (>=1.6.0)", "sphinxcontrib-spelling (>=7.3)", "time-machine", "towncrier", "twine", "types-Deprecated", "types-Markdown", "types-PyMySQL", "types-PyYAML", "types-certifi", "types-croniter", "types-docutils", "types-paramiko", "types-protobuf", "types-python-dateutil", "types-python-slugify", "types-pytz", "types-redis", "types-requests", "types-setuptools", "types-tabulate", "types-termcolor", "types-toml", "wheel", "yamllint"] -devel-all = ["PyGithub (!=1.58)", "PyOpenSSL", "adal (>=1.2.7)", "aiobotocore (>=2.1.1)", "aiohttp", "aiohttp (>=3.6.3,<4)", "aioresponses", "alibabacloud-adb20211201 (>=1.0.0)", "alibabacloud-tea-openapi (>=0.3.7)", "amqp", "analytics-python (>=1.2.9)", "apache-airflow (>=2.4.0)", "apache-airflow (>=2.7.0)", "apache-airflow-providers-airbyte", "apache-airflow-providers-alibaba", "apache-airflow-providers-amazon", "apache-airflow-providers-apache-beam", "apache-airflow-providers-apache-cassandra", "apache-airflow-providers-apache-drill", "apache-airflow-providers-apache-druid", "apache-airflow-providers-apache-flink", "apache-airflow-providers-apache-hdfs", "apache-airflow-providers-apache-hive", "apache-airflow-providers-apache-impala", "apache-airflow-providers-apache-kafka", "apache-airflow-providers-apache-kylin", "apache-airflow-providers-apache-livy", "apache-airflow-providers-apache-pig", "apache-airflow-providers-apache-pinot", "apache-airflow-providers-apache-spark", "apache-airflow-providers-apache-sqoop", "apache-airflow-providers-apprise", "apache-airflow-providers-arangodb", "apache-airflow-providers-asana", "apache-airflow-providers-atlassian-jira", "apache-airflow-providers-celery", "apache-airflow-providers-cloudant", "apache-airflow-providers-cncf-kubernetes", "apache-airflow-providers-common-sql", "apache-airflow-providers-daskexecutor", "apache-airflow-providers-databricks", "apache-airflow-providers-datadog", "apache-airflow-providers-dbt-cloud", "apache-airflow-providers-dingding", "apache-airflow-providers-discord", "apache-airflow-providers-docker", "apache-airflow-providers-elasticsearch", "apache-airflow-providers-exasol", "apache-airflow-providers-facebook", "apache-airflow-providers-ftp", "apache-airflow-providers-github", "apache-airflow-providers-google", "apache-airflow-providers-grpc", "apache-airflow-providers-hashicorp", "apache-airflow-providers-http", "apache-airflow-providers-imap", "apache-airflow-providers-influxdb", "apache-airflow-providers-jdbc", "apache-airflow-providers-jenkins", "apache-airflow-providers-microsoft-azure", "apache-airflow-providers-microsoft-mssql", "apache-airflow-providers-microsoft-psrp", "apache-airflow-providers-microsoft-winrm", "apache-airflow-providers-mongo", "apache-airflow-providers-mysql", "apache-airflow-providers-neo4j", "apache-airflow-providers-odbc", "apache-airflow-providers-openfaas", "apache-airflow-providers-openlineage", "apache-airflow-providers-opsgenie", "apache-airflow-providers-oracle", "apache-airflow-providers-pagerduty", "apache-airflow-providers-papermill", "apache-airflow-providers-plexus", "apache-airflow-providers-postgres", 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["apache-airflow-providers-dingding"] discord = ["apache-airflow-providers-discord"] -doc = ["astroid (>=2.12.3)", "checksumdir", "click (>=8.0,!=8.1.4,!=8.1.5)", "docutils (<0.17.0)", "eralchemy2", "sphinx (>=5.2.0)", "sphinx-airflow-theme", "sphinx-argparse (>=0.1.13)", "sphinx-autoapi (>=2.0.0)", "sphinx-copybutton", "sphinx-jinja (>=2.0)", "sphinx-rtd-theme (>=0.1.6)", "sphinxcontrib-httpdomain (>=1.7.0)", "sphinxcontrib-redoc (>=1.6.0)", "sphinxcontrib-spelling (>=7.3)"] +doc = ["astroid (>=2.12.3,<3.0)", "checksumdir", "click (>=8.0,!=8.1.4,!=8.1.5)", "docutils (<0.17.0)", "eralchemy2", "sphinx (>=5.2.0)", "sphinx-airflow-theme", "sphinx-argparse (>=0.1.13)", "sphinx-autoapi (>=2.0.0)", "sphinx-copybutton", "sphinx-jinja (>=2.0)", "sphinx-rtd-theme (>=0.1.6)", "sphinxcontrib-httpdomain (>=1.7.0)", "sphinxcontrib-redoc (>=1.6.0)", "sphinxcontrib-spelling (>=7.3)"] doc-gen = ["eralchemy2"] docker = ["apache-airflow-providers-docker"] druid = ["apache-airflow-providers-apache-druid"] @@ -645,7 +645,7 @@ msrest = ">=0.6.21" [[package]] name = "azure-storage-blob" -version = "12.18.2" +version = "12.18.3" description = "Microsoft Azure Blob Storage Client Library for Python" category = "main" optional = false @@ -733,7 +733,7 @@ python-versions = ">=3.7" [[package]] name = "bokeh" -version = "3.2.2" +version = "3.3.0" description = "Interactive plots and applications in the browser from Python" category = "main" optional = false @@ -752,14 +752,14 @@ xyzservices = ">=2021.09.1" [[package]] name = "boto3" -version = "1.28.62" +version = "1.28.63" description = "The AWS SDK for Python" category = "main" optional = false python-versions = ">= 3.7" [package.dependencies] -botocore = ">=1.31.62,<1.32.0" +botocore = ">=1.31.63,<1.32.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.7.0,<0.8.0" @@ -768,7 +768,7 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.31.62" +version = "1.31.63" description = "Low-level, data-driven core of boto 3." category = "main" optional = false @@ -1022,7 +1022,7 @@ dev = ["polib"] [[package]] name = "croniter" -version = "2.0.0" +version = "2.0.1" description = "croniter provides iteration for datetime object with cron like format" category = "dev" optional = false @@ -1612,11 +1612,11 @@ tool = ["click (>=6.0.0)"] [[package]] name = "google-cloud-aiplatform" -version = "1.34.0" +version = "1.35.0" description = "Vertex AI API client library" category = "dev" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" [package.dependencies] google-api-core = {version = ">=1.32.0,<2.0.0 || >=2.8.0,<3.0.0dev", extras = ["grpc"]} @@ -1626,23 +1626,23 @@ google-cloud-storage = ">=1.32.0,<3.0.0dev" packaging = ">=14.3" proto-plus = ">=1.22.0,<2.0.0dev" protobuf = ">=3.19.5,<3.20.0 || >3.20.0,<3.20.1 || >3.20.1,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || 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