From 5e06d6eb598d9a2d052d7040e70823d34d500410 Mon Sep 17 00:00:00 2001 From: github-actions Date: Tue, 17 Dec 2024 13:02:03 +0000 Subject: [PATCH] 2.0.1 Automatically generated by python-semantic-release --- CHANGELOG.md | 94 +++++++++++++++++++++++++++++++++++++++----------- pyproject.toml | 2 +- 2 files changed, 75 insertions(+), 21 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 4bd75fdf0..8077ed153 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,18 +8,68 @@ +## v2.0.1 (2024-12-17) +### 🐛 Fix + + +- release process runs twice [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + + +- release process no longer triggers on skipped release [\@project-defiant](mailto:szymonszyszkowski@gmail.com) + +### ♻️ Refactor + + +- drop version_engine (#940) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + +### 🏗 Build + + +- \[**deps-dev**\] bump ipython from 8.29.0 to 8.30.0 [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps-dev**\] bump google-cloud-dataproc from 5.8.0 to 5.10.1 (#951) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps-dev**\] bump lxml from 5.1.1 to 5.3.0 (#950) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps-dev**\] bump pytest-xdist from 3.5.0 to 3.6.1 (#952) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- \[**deps-dev**\] bump ipykernel from 6.28.0 to 6.29.5 (#953) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + + +- define dependency version constraints + other fixes (#945) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) + +### 🚀 Chore + + +- siplify the release CI conditions [\@project-defiant](mailto:szymonszyszkowski@gmail.com) + ## v2.0.0 (2024-12-10) ### 💥 Breaking - \[**l2g!**\] implement new training strategy splitting between EFO/gene pairs and with cross validation (#938) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) +### 🐛 Fix -- \[**L2GFeatureMatrix!**\] streamline feature matrix management (#745) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) +- \[**l2g_predictions**\] annotate based on list of features + filter out missing annotation (#925) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) + + +- swap the ref parse (#935) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + +### 🏗 Build + + +- \[**deps-dev**\] bump ruff from 0.7.1 to 0.8.1 (#936) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) -- drop airflow orchestration layer from gentropy (#758) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) +- \[**deps-dev**\] bump ipython from 8.29.0 to 8.30.0 (#937) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) + +## v2.0.0-rc.3 (2024-11-27) ### ✨ Feature @@ -37,6 +87,28 @@ - \[**gold_standard**\] add traitFromSourceMappedId to schema (#924) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) +### 🚀 Chore + + +- \[**vep**\] Ensembl version update (#931) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) + +## v2.0.0-rc.2 (2024-11-26) +### 🚀 Chore + + +- \[**gnomad**\] updating GnomAD version to 4.1 from 4.0 + using joint frequencies (#929) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) + +## v2.0.0-rc.1 (2024-11-22) +### 💥 Breaking + + +- \[**L2GFeatureMatrix!**\] streamline feature matrix management (#745) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) + + +- drop airflow orchestration layer from gentropy (#758) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) + +### ✨ Feature + - changing studylocus validation to 95 percent credible sets (#921) [\@Daniel-Considine](mailto:113430683+Daniel-Considine@users.noreply.github.com) @@ -235,12 +307,6 @@ ### 🐛 Fix -- \[**l2g_predictions**\] annotate based on list of features + filter out missing annotation (#925) [\@Irene López Santiago](mailto:45119610+ireneisdoomed@users.noreply.github.com) - - -- swap the ref parse (#935) [\@Szymon Szyszkowski](mailto:69353402+project-defiant@users.noreply.github.com) - - - r2 for lead variant is always 1 (#919) [\@Yakov](mailto:yt4@sanger.ac.uk) @@ -446,12 +512,6 @@ ### 🏗 Build -- \[**deps-dev**\] bump ruff from 0.7.1 to 0.8.1 (#936) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) - - -- \[**deps-dev**\] bump ipython from 8.29.0 to 8.30.0 (#937) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) - - - \[**deps-dev**\] bump pytest-cov from 5.0.0 to 6.0.0 (#893) [\@dependabot[bot]](mailto:49699333+dependabot[bot]@users.noreply.github.com) @@ -528,12 +588,6 @@ ### 🚀 Chore -- \[**vep**\] Ensembl version update (#931) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) - - -- \[**gnomad**\] updating GnomAD version to 4.1 from 4.0 + using joint frequencies (#929) [\@Daniel Suveges](mailto:daniel.suveges@protonmail.com) - - - pre-commit autoupdate (#918) [\@pre-commit-ci[bot]](mailto:66853113+pre-commit-ci[bot]@users.noreply.github.com) diff --git a/pyproject.toml b/pyproject.toml index 8878d4fcc..0cec28e9a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] name = "gentropy" # !! version is managed by semantic_release -version = "2.0.0" +version = "2.0.1" description = "Open Targets python framework for post-GWAS analysis" authors = ["Open Targets core team"] license = "Apache-2.0"