From 332e0d58dee315c9aa5f57f20464d1097c41cb59 Mon Sep 17 00:00:00 2001
From: Szymon Szyszkowski <ss60@mib117351s.internal.sanger.ac.uk>
Date: Tue, 13 Aug 2024 10:12:03 +0100
Subject: [PATCH] fix: debug v2

---
 .github/workflows/tag.yaml | 86 --------------------------------------
 setup.sh                   |  4 +-
 2 files changed, 3 insertions(+), 87 deletions(-)

diff --git a/.github/workflows/tag.yaml b/.github/workflows/tag.yaml
index 1722468..0997101 100644
--- a/.github/workflows/tag.yaml
+++ b/.github/workflows/tag.yaml
@@ -51,89 +51,3 @@ jobs:
           # see https://github.com/actions/create-github-app-token
           github_token: ${{ secrets.GITHUB_TOKEN }}
           tag: ${{ steps.semrelease.outputs.tag }}
-
-      - name: Store the distribution packages
-        uses: actions/upload-artifact@v4
-        with:
-          name: python-package-distributions
-          path: dist/
-
-  publish-to-pypi:
-    needs: release
-    name: >-
-      Publish 📦 in PyPI
-    if: github.ref == 'refs/heads/main'
-    runs-on: ubuntu-latest
-    environment:
-      name: pypi
-      url: https://pypi.org/p/gentropy
-    permissions:
-      id-token: write # IMPORTANT: mandatory for trusted publishing
-    steps:
-      - name: Download all the dists
-        uses: actions/download-artifact@v4
-        with:
-          name: python-package-distributions
-          path: dist/
-      - name: Publish distribution 📦 to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
-
-  publish-to-testpypi:
-    name: Publish 📦 in TestPyPI
-    needs: release
-    if: github.ref != 'refs/heads/main'
-    runs-on: ubuntu-latest
-
-    environment:
-      name: testpypi
-      url: https://test.pypi.org/p/gentropy
-
-    permissions:
-      id-token: write # IMPORTANT: mandatory for trusted publishing
-
-    steps:
-      - name: Download all the dists
-        uses: actions/download-artifact@v4
-        with:
-          name: python-package-distributions
-          path: dist/
-      - name: Publish distribution 📦 to TestPyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
-        with:
-          repository-url: https://test.pypi.org/legacy/
-
-  documentation:
-    needs: release
-    runs-on: ubuntu-latest
-    if: github.ref == 'refs/heads/main'
-    steps:
-      - uses: actions/checkout@v4
-        with:
-          fetch-depth: 0
-          token: ${{ secrets.GITHUB_TOKEN }}
-      - name: Set up Python
-        uses: actions/setup-python@v4
-        with:
-          python-version: ${{ env.PYTHON_VERSION_DEFAULT }}
-      - name: Install and configure Poetry
-        uses: snok/install-poetry@v1
-        with:
-          virtualenvs-create: true
-          virtualenvs-in-project: true
-          installer-parallel: true
-      - name: Load cached venv
-        id: cached-poetry-dependencies
-        uses: actions/cache@v4
-        with:
-          path: .venv
-          key: |
-            venv-${{ runner.os }}-\
-            ${{ env.PYTHON_VERSION_DEFAULT }}-\
-            ${{ hashFiles('**/poetry.lock') }}
-      - name: Install dependencies
-        if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
-        run: poetry install --no-interaction --no-root
-      - name: Install library
-        run: poetry install --without tests --no-interaction
-      - name: Publish docs
-        run: poetry run mkdocs gh-deploy --force
diff --git a/setup.sh b/setup.sh
index b8c451b..8c7883e 100755
--- a/setup.sh
+++ b/setup.sh
@@ -24,7 +24,9 @@ else
     echo "uv is already installed."
 fi
 source $SHELL_RC
-cat $SHELL_RC
+which rye
+echo $PATH
+cat $HOME/.rye/env
 rye sync
 rye run pre-commit install --hook-type commit-msg --hook-type pre-commit