From 1e70c06b526bfc6f46bc3875b3184fe1d03a8f49 Mon Sep 17 00:00:00 2001 From: Daniel-Considine <113430683+Daniel-Considine@users.noreply.github.com> Date: Wed, 5 Feb 2025 14:17:18 +0000 Subject: [PATCH] fix: finngen r12 curation url updated from R11 to R12 (#92) * feat: update to finngen release 12 * fix: poetry export plugin * fix: poetry.lock * fix: updating pycln * fix: bumping versions * fix: adding pycln to precommit * fix: removing pycln from toml * fix: updating path to finngen r12 curation url --------- Co-authored-by: Szymon Szyszkowski <69353402+project-defiant@users.noreply.github.com> --- src/ot_orchestration/dags/config/finngen_ingestion.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ot_orchestration/dags/config/finngen_ingestion.yaml b/src/ot_orchestration/dags/config/finngen_ingestion.yaml index 9ab682c..ba9bc82 100644 --- a/src/ot_orchestration/dags/config/finngen_ingestion.yaml +++ b/src/ot_orchestration/dags/config/finngen_ingestion.yaml @@ -21,7 +21,7 @@ nodes: step.finngen_summary_stats_url_prefix: gs://finngen-public-data-r12/summary_stats/finngen_R12_ step.sample_size: 500_348 step.finngen_summary_stats_url_suffix: '.gz' - step.efo_curation_mapping_url: https://raw.githubusercontent.com/opentargets/curation/24.09.1/mappings/disease/manual_string.tsv + step.efo_curation_mapping_url: https://raw.githubusercontent.com/opentargets/curation/refs/tags/25.01/mappings/disease/manual_string.tsv step.session.write_mode: overwrite step.session.start_hail: true - id: finngen_finemapping_ingestion