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Commit 793cb8e

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Peter Causey-Freeman
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Merge pull request #107 from openvar/develop_v3
Fix for issue #100
2 parents 61d0ffd + a6e5243 commit 793cb8e

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VariantValidator/modules/mappers.py

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -143,8 +143,9 @@ def gene_to_transcripts(variant, validator, select_transcripts_dict):
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logger.warning(str(error))
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return True
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else:
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error = 'Please ensure the requested chromosome version relates to a supported genome build. ' \
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'Supported genome builds are: GRCh37, GRCh38, hg19 and hg38'
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error = 'Validation will fail if the selected chromosome reference sequence does not corresponds to ' \
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'selected genome build. Please re-submit your query and select an alternate genome build. ' \
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'Note, if you did not specify a genome build, VariantValidator defaults to GRCh38'
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variant.warnings.append(error)
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logger.warning(str(error))
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return True

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