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ensembl-data

Mirror of GTF and FASTA data from the Ensembl FTP servers.

Each supported species (so far just human and mouse) has a Github release in this repository corresponding to a release of Ensembl. The release has the following attached files:

  • GTF contains genes, transcripts, and exons
  • FASTA file of protein sequences
  • FASTA file of coding transcript cDNA
  • FASTA file of non-coding transcripts